Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq17325 127 1e-24 seq15435 127 1e-24 seq15717 105 4e-18 seq15710 105 4e-18 seq15163 105 4e-18 seq1932 95.1 8e-15 seq7266 89.7 3e-13 seq3858 87.8 1e-12 >seq17325 Length=556 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 554 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 495 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 494 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 460 >seq15435 Length=745 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 649 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 708 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 709 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 743 >seq15717 Length=712 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 617 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 558 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 557 GCTGACAATATTTAGCCTT 539 >seq15710 Length=713 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 617 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 558 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 557 GCTGACAATATTTAGCCTT 539 >seq15163 Length=781 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 167 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 226 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 227 GCTGACAATATTTAGCCTT 245 >seq1932 Length=5666 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || ||| | || | || || ||| |||||| || || ||||| || | Sbjct 5626 TACCGCCACGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 5567 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || |||| |||| || | || || || || || || || || || || |||| | Sbjct 5566 CCAGGGCACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGGTCGGGAG 5507 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| |||||| ||| ||||||||||| |||| || || || | || | Sbjct 5506 GGATGCCTTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGA 5447 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA-TGTTT 38321 | || | || || || || || || | ||| |||||||| ||||||| ||||| Sbjct 5446 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTTT 5393 >seq7266 Length=2119 Score = 89.7 bits (98), Expect = 3e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| |||||| || || ||||| || | || || |||| || | || Sbjct 1574 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 1515 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || || || || ||||||| |||| ||| || |||||| || ||| Sbjct 1514 TTACCGGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTT 1455 Query 38235 TGCTTCACATTCTGGACAGTAT--CTCCACTTTCAACTTCTAATGTAATAGTTTTACCCG 38292 |||||||| |||| || |||| ||| || || || || | || || || || || | Sbjct 1454 TGCTTCACGTTCTCGATGGTATCGCTCGAC--TCGACCTCGAGGGTGATGGTCTTGCCGG 1397 Query 38293 TCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||| |||||||| || ||||| Sbjct 1396 TCAGGGTCTTCACGAAGATTTGCAT 1372 >seq3858 Length=3670 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || ||||| | || ||| | || | || || ||| |||||| || || ||||| || Sbjct 939 TTGCCACCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 880 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 | || ||| |||| || | || || || || || || || || || ||||| | | Sbjct 879 GCCAGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGATCCGGG 820 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||| || |||||| || ||||||||||| |||| || ||||| | || Sbjct 819 GGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTGGACTCG 760 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | || || || || || |||| || || ||||| ||||||||| Sbjct 759 ACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334873320905438