Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq208 98.7 1e-15 >seq208 Length=14689 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 15047 ACGCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCACGTGCGGCAT 15105 |||||| |||||||||||||||| | || | ||||| |||||||| ||| ||||| Sbjct 1083 ACGCCCCAGATTGGCGACAAGTTCAGTTCGCGCCATGGC-CAAAAGGGTACGGTGGGCAT 1025 Query 15106 GATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCAT 15165 || | || ||||| ||||||||||| | | |||||| || |||||||| ||| | Sbjct 1024 CATGTACCGGCAGGAGGACATGCCCTTCAACATCGAAGGCATCACCCCCGACATCATCGT 965 Query 15166 CAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||||| || ||| || || || |||||||| Sbjct 964 CAACCCGCACGCCATTCCCTCGCGAATGACCAT 932 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || ||||| || ||||| || | || || |||||||| | |||||||| ||| || Sbjct 528 TTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACTCG 469 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGC--GGTCGATCGCAAG 15518 || | | ||| | |||| || ||| | ||||| | || || ||||||| | Sbjct 468 CGCGCTCGCGGCCCGGTGCAGATTCTCACGAGGCAGCC--AGTGGAGGGCCGATCGCGCG 411 Query 15519 GCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCC 15578 |||||| ||| | || ||||||||||| |||||||| | |||||||| ||| Sbjct 410 ACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGCCC 351 Query 15579 AATTCCTCAACGAGCG 15594 | |||||||| ||||| Sbjct 350 AGTTCCTCAAGGAGCG 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611253687844800