Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4651 118 1e-21 >seq4651 Length=3183 Score = 118 bits (130), Expect = 1e-21 Identities = 382/585 (65%), Gaps = 11/585 (2%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| ||| || ||||| | | || || | || || || ||||||||||| || | | Sbjct 1561 ATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-T 1503 Query 93188 GAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 | |||| || || || || || || || || || ||||| || ||| | || | ||| || Sbjct 1502 GGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTC 1443 Query 93247 GGCAAAATTTGCG--GAATTAC-TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 ||| || | || | | | || ||||||| || | ||||| ||||| || ||||| Sbjct 1442 GGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTT 1383 Query 93304 AATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 | | || | || ||||| ||| || ||| || |||| | || || | Sbjct 1382 GACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGGAGTCCTTGAC 1323 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| | || || ||||| || || |||| ||||| || || ||||| || Sbjct 1322 GTAGGTGTCGATGAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAA 1263 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||| || | || || | | |||||| || | || | | ||||||| Sbjct 1262 GCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATT 1203 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 || || || || ||| || || || || ||||| | ||||| || || || | Sbjct 1202 CTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCT 1143 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTC 93600 ||| || | || ||| ||||| | | | || | || ||||||||||| || Sbjct 1142 CTCGTCGTTGTTGAGCGATTCCCAGT--GCTTCAT-GTCGGAGCTCAGATCGACTTCCTC 1086 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 | | ||||| || || || || || || |||||||| ||||| ||| || | | || Sbjct 1085 GGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATGCGCTGGTGGCGGAT 1026 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | || || || || ||||| || | || | |||||| Sbjct 1025 GGGGAACAGCACGAATCGGTTGGGGTTCTCCTCGAGCAGCGGCTC 981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556734824165520