Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7266 122 7e-23 seq3858 107 2e-18 seq1785 107 2e-18 seq140 107 2e-18 seq6713 104 2e-17 seq15283 98.7 8e-16 seq6806 98.7 8e-16 seq6454 95.1 1e-14 seq4204 95.1 1e-14 seq4764 89.7 4e-13 seq3544 86.0 5e-12 seq4792 82.4 6e-11 >seq7266 Length=2119 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| || || || || | | | Sbjct 1372 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC 1431 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||||| || || ||||||||||| || || |||||||| Sbjct 1432 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 1491 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | ||||| ||||||| | |||| |||||| Sbjct 1492 CAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 1551 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || | || | || ||||||| || Sbjct 1552 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGTCTGCGCGGCGG 1598 >seq3858 Length=3670 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || ||| | Sbjct 710 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 769 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||||| || || ||||||||||| || || || ||||| Sbjct 770 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 829 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| ||| ||| | |||| |||||| Sbjct 830 CAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 889 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || | || | || ||||||| || Sbjct 890 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGTCTGCGCGGTGG 936 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || || | || || || || |||| || || || || | Sbjct 479 AACATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGTCG 538 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | || | |||| || || || || ||||||||||| || || || || Sbjct 539 AGCGACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 598 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | ||||| ||||||| | |||| ||| Sbjct 599 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTAC 658 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || || || || Sbjct 659 AACATCCAGAAGGAGTCGAC 678 >seq1785 Length=5934 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || ||||||| || || || | || Sbjct 4348 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 4289 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||||||||| || ||||| Sbjct 4288 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCGGATCAG 4229 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || ||||| ||| | ||||| |||||| | |||| |||||| Sbjct 4228 CAGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGACTACAAC 4169 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 4168 ATCCAGAAGGAGTCCAC 4152 >seq140 Length=17166 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||| | || || |||| || || || ||| ||| | Sbjct 1664 ATGCAGATCTTTGTGAAGACTATCACCTGCAAGACCATCACCCTCGAGGTCGAATCCAGC 1605 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | || ||||| | || ||||||||||||||||| ||||||| Sbjct 1604 GATACCATCGAGAGCGTGAAGCAAAAGGTCCAGGACAAGGAGGGTATTCCTACCGATCAG 1545 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || || | ||||| ||||||| || |||| | |||| Sbjct 1544 CAGCGTCTCATCTTCGCGGGTAAGGAGCTCGAGGACGGCCGCACCCTCGCCGACTGCAAC 1485 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||| || | || | ||| | || ||||||| || Sbjct 1484 ATCCAGCCGGAGTCCTCCCTCCACCTCGTTCTTCGTCTGCGCGGCGG 1438 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | | | Sbjct 1436 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 1377 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||||||||| || || ||||| || Sbjct 1376 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 1317 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||| || | |||| |||||| Sbjct 1316 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACTCTGGCCGACTACAAC 1257 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || ||||| |||| || || Sbjct 1256 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTGCGACTGCGTGGTGG 1210 >seq6713 Length=2293 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||| ||| | ||||| || || || | | | Sbjct 11 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATTACTCTCGAGGTCGAGTCGAGC 70 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || || ||||||||||| || || || || || Sbjct 71 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 130 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||| ||| | |||| |||||| Sbjct 131 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 190 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || || || Sbjct 191 ATCCAAAAGGAGTCGAC 207 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | | | Sbjct 239 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGAGCTCG 298 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||||||||| || || ||||| || Sbjct 299 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 358 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | |||||| || ||| | | || |||||| Sbjct 359 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTGGCTGACTACAAC 418 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 419 ATCCAGAAGGAGTCGAC 435 >seq15283 Length=765 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || ||| | Sbjct 1 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 60 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||| || || || || || Sbjct 61 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 120 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| |||||| || | || |||||| Sbjct 121 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGACTACAAC 180 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || | || | || ||||||| || Sbjct 181 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGTCTGCGCGGCGG 227 >seq6806 Length=2266 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || ||| | Sbjct 2015 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 2074 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || || ||||||||||| || || || ||||| Sbjct 2075 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 2134 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| |||||| | |||| |||||| Sbjct 2135 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTGGCCGACTACAAC 2194 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 2195 ATCCAGAAGGAGTCGAC 2211 >seq6454 Length=2394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || || | || || || || |||| || || || || | Sbjct 297 AACATGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTTGAGTCG 238 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | || | |||| || || || || ||||||||||| || || || ||| Sbjct 237 AGCGACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAT 178 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || || ||||| ||| | ||||| ||| ||| || |||| ||| Sbjct 177 CAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCCGACTAC 118 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||| || || ||||| || Sbjct 117 AACATCCAGAAGGAATCGAC 98 >seq4204 Length=3449 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| ||| | ||||| || || || | | | Sbjct 11 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACGATTACTCTCGAGGTCGAGTCGAGC 70 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||| || || || || || Sbjct 71 GACACTATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 130 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| || |||| |||||| Sbjct 131 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 190 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 191 ATCCAGAAGGAGTCCAC 207 >seq4764 Length=3127 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || | || || || || || | | | Sbjct 294 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCGAGC 235 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || || ||||||||||| ||||| || ||||| Sbjct 234 GACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAG 175 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||| ||| | |||| |||||| Sbjct 174 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 115 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 114 ATCCAGAAGGAGTCTAC 98 >seq3544 Length=3891 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 22257 CACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAA 22316 ||| || || || || ||| ||||||| | || |||| || || || || ||||| Sbjct 623 CACCCTCGAGGTCGAGTCCAGCGATACCATCGAGAGCGTCAAGCAGAAGATCCAGGACAA 564 Query 22317 GGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCA 22376 |||||| || | |||||||| || | || | || |||||||| ||| | ||||| Sbjct 563 GGAGGGCATCGCCCCCGATCAGCAGTGCCTCTTCTTCGCCGGCAAGCAGCTCGAGGACGG 504 Query 22377 CCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 ||||||| || | || |||||||| || || || ||||| || || Sbjct 503 CCGCACCCTCGCTGACTACAACATCCAGAAGGAGTCCACTATCCA 459 >seq4792 Length=3108 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || ||| | Sbjct 1511 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 1570 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || || ||||||||||| || || || || || Sbjct 1571 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1630 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | ||||| |||||| | | || |||||| Sbjct 1631 CAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGCACTCTGGCTGACTACAAC 1690 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 1691 ATCCAGAAGGAGTCCACC 1708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419635420857370