Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1932 140 3e-28 seq1785 122 7e-23 seq3858 118 9e-22 seq6806 113 4e-20 seq7588 109 5e-19 seq4792 107 2e-18 seq6713 105 6e-18 seq7266 104 2e-17 seq4764 104 2e-17 seq140 100 2e-16 seq15283 95.1 1e-14 >seq1932 Length=5666 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | ||| | || | || || || || || |||||||| ||| Sbjct 5627 ATACCGCCACGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 5568 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| || || || || ||||| ||| ||||||||||||| ||||| ||| Sbjct 5567 GCCAGGGCACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGGTCGGGA 5508 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||||||||| || | | || | ||||||| |||| ||| Sbjct 5507 GGGATGCCTTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCG 5448 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || |||||||| || || || || || |||||||| Sbjct 5447 ACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 5398 >seq1785 Length=5934 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | ||| | || | || || || || || |||||||| ||| Sbjct 4347 ATACCGCCACGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 4406 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || |||||||| ||||||||||||| ||||| ||| Sbjct 4407 GCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGA 4466 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||||| || | | || | |||||| |||| ||| Sbjct 4467 GGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGACTCG 4526 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||||||||| || || || || || ||||| Sbjct 4527 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 4576 >seq3858 Length=3670 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || ||||| || || || || ||||| Sbjct 906 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCC 847 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| || ||||| || ||||| || ||||| |||||||| || Sbjct 846 GCGAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTC 787 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| ||| |||| ||||| || | ||| | || ||||||||||| || Sbjct 786 ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTC 727 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 726 TTGACGAAGATCTGCATG 709 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || || || || || || || Sbjct 678 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 619 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 618 GCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 559 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || || || || | ||| | || ||||| ||||| || Sbjct 558 ACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 499 Query 114366 TTTACAAAAATCTGCATG 114383 || || || || |||||| Sbjct 498 TTCACGAAGATTTGCATG 481 >seq6806 Length=2266 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || || || || || |||||||| ||| Sbjct 2244 ATACCGCCACGAAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCG 2185 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || || || || || || |||||| ||||||||||||| || || ||| Sbjct 2184 GCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGA 2125 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || || | | || | ||| ||| |||| ||| Sbjct 2124 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTATCGCTGGACTCG 2065 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| || || || || || |||||||| Sbjct 2064 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2015 >seq7588 Length=2028 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| ||| || || || || || || || || || Sbjct 231 CGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 172 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||||||||| || || || || |||||||| ||||| ||||| || || Sbjct 171 GGCGAAGATGAGACGCTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGGATCTTCTGCTT 112 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||||||| |||| ||||| || | || | ||| ||||||||||| || Sbjct 111 CACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGAGTAATCGTCTTGCCGGTCAGGGT 52 Query 114365 TTTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 51 CTTGACGAAGATCTGCAT 34 >seq4792 Length=3108 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || ||| || || || || || ||||| Sbjct 1707 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTGCGGCCGTCCTCGAGCTGCTTACCC 1648 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || ||||| || ||||| ||||| || || Sbjct 1647 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 1588 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| |||| ||||| || | ||| | || |||||||| || || Sbjct 1587 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1528 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1527 TTCACGAAGATCTGCAT 1511 >seq6713 Length=2293 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || |||||| ||| || || || || || Sbjct 435 GTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGACCATCCTCGAGCTGCTTGCCG 376 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| ||||| ||||| || ||||| ||||| || || Sbjct 375 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 316 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | ||||| || | ||| | || |||||||| || || Sbjct 315 ACGTTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTC 256 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 255 TTGACGAAGATCTGCATG 238 >seq7266 Length=2119 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || || || || || ||||| Sbjct 1568 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCG 1509 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| || || ||||| ||||| || ||||| |||||||| || Sbjct 1508 GCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTC 1449 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| ||| | || ||||| || | ||| | || ||||||||||| || Sbjct 1448 ACGTTCTCGATGGTATCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 1389 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 1388 TTCACGAAGATTTGCAT 1372 >seq4764 Length=3127 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| ||| || ||||| || || || || || || Sbjct 98 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 157 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| || ||||| |||||||| || ||||| ||||| || || Sbjct 158 GCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTG 217 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || || || || | ||| | || ||||||||||| || Sbjct 218 ACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTC 277 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 278 TTCACGAAGATCTGCAT 294 >seq140 Length=17166 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||| || || | || | || || || || || |||||||| ||| | Sbjct 1210 CCACCACGCAGTCGCAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1269 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| || || || || || || || ||| ||||||| ||||| ||||| || || Sbjct 1270 AGAGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 1329 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| ||||| || || | | || | |||||| | | ||||| Sbjct 1330 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGCTCTCGACC 1389 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | || ||||||||||| || || || || ||||||||| Sbjct 1390 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATG 1437 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 ||||| ||| ||||||||||||| || || | |||||| || || ||||| | |||| Sbjct 1522 TTACCCGCGAAGATGAGACGCTGCTGATCGGTAGGAATACCCTCCTTGTCCTGGACCTTT 1581 Query 114300 TGTTTTA-GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | ||| || | ||| ||| |||||||||| || | ||| | || |||| ||| Sbjct 1582 TGCTTCACGCT-CTCGATGGTATCGCTGGATTCGACCTCGAGGGTGATGGTCTTGCAGGT 1640 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 | ||| || ||||| |||||||| Sbjct 1641 GATAGTCTTCACAAAGATCTGCAT 1664 >seq15283 Length=765 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| ||||||||||||| |||||||| || ||||| || ||| Sbjct 155 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 96 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || || | | || | |||||| |||| ||||| || | ||| | Sbjct 95 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATG 36 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||| || || || || || |||||||| Sbjct 35 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420041731217976