Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq378 556 2e-153 seq4651 426 3e-114 seq5429 93.3 8e-14 >seq378 Length=11515 Score = 556 bits (616), Expect = 2e-153 Identities = 979/1418 (69%), Gaps = 71/1418 (5%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTT 243795 ||| ||||||||| || || | |||||| | ||| | |||||||||||||||||||| Sbjct 5744 ACGGTGAACTGGATCGCGTTGG-CGGCGGGCCGGGTGCGAAGGTAGTACATGCCGGTCTT 5686 Query 243796 GAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGG 243855 ||| || || |||||||| || |||||| | || ||||| | | ||| | Sbjct 5685 GAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCAAAC--GAG-----G 5633 Query 243856 GTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTC 243915 | ||||| || ||| |||||| |||||||||||||||| | ||| || || || Sbjct 5632 G-----CTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGATC 5578 Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 ||||||||| ||||| | | ||| | | ||| || | |||||||| | ||| Sbjct 5577 GGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTGTACAGCTTCTT 5518 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 || || ||||||| | | |||||| ||| |||||||| ||||| || ||||| | | Sbjct 5517 GATGTCGTCGGGGATCTCCTCGATGCGCTGGACCGAGCCGTTGTGCGAGACGAGCTTGTT 5458 Query 244036 -----GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAG---GTGC 244087 |||| | | ||| ||||| ||||| | | |||| ||| |||| Sbjct 5457 CTTGAGCGCGGGCGA-----CCAGAGGCC---GCGCTGCTGGAGCTCGCGCAGAAGGTGC 5406 Query 244088 CTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147 ||| || || || || || | || | |||||| ||||| |||| | || Sbjct 5405 TCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAG 5346 Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||| | || ||| |||||||||| ||||||| || || || |||||||||| | Sbjct 5345 GGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCC 5286 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCC 244267 || || || ||| | || |||||| |||| | | |||| | ||||||| Sbjct 5285 ACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAGTCC 5226 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 ||| || |||| | | || |||||| | ||| ||| ||| |||||| Sbjct 5225 CACCTGTCCGACGGCAC---------GACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTG 5175 Query 244328 CTGACG-GGGCT-GCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGC 244385 |||| |||| ||||||||||||| |||||| || ||| ||| || |||| | Sbjct 5174 --GACGCGGGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTC---GT 5120 Query 244386 TCTCGTCGA---GGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGG 244442 || | ||| |||||||||||||||||||||||||||| ||| | ||||||| Sbjct 5119 TCGAGGCGACCAGGGCGGCGTAGTAGATGGTCTCGAAGATGGCGCGGTTGAGCTCGCGGG 5060 Query 244443 CCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGC 244502 ||| | ||| | ||| || ||| |||||||||||||||||||| |||||||| | Sbjct 5059 CCTCGTCGCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTC 5000 Query 244503 CGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGT 244562 ||||||||||||| ||||| ||| |||| ||| ||| |||||||||||||| ||| Sbjct 4999 CGATGCCGATGGGCCTGTGGCGCATGTTCGAGTTGCGGGCCTCGGGCACGGGGTAGTAGT 4940 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622 || ||||||||||||||||||||| ||||| || ||||||||| |||| || Sbjct 4939 TGATGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCT 4880 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 | ||| ||||| || ||||||| |||| | || |||| Sbjct 4879 GGTGGTCAAACTCGC------------CGTTGGTGATG------AACTTGGGCAGCGCGA 4838 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 |||||||||||||||||||||||| || | ||||||||||| | ||| |||| Sbjct 4837 GCGAGGCCAGGTTGCAGACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGC 4778 Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802 | ||||| ||| |||||||| |||||||| || ||||||||| |||||||||||| Sbjct 4777 ACAGGTTCGACGACTGAATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGT 4718 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||||| |||||| ||||| |||||||||| ||| | |||||| | | ||| | Sbjct 4717 CCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAACCACA 4658 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922 | ||| ||||||||| | ||| || |||||| ||||||||| |||| Sbjct 4657 GCTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCT 4598 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG--CACGACGCCGGGCACATGAG 244980 |||||||||| |||||| ||| ||||||||| | || | ||||| | ||| Sbjct 4597 CCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGTTG--GGGCAAAAGAG 4540 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 ||| |||||||| || || | || |||||| |||||||| ||||| ||| | | Sbjct 4539 CGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGCCGTA 4480 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 |||||| || | || | | ||| ||| ||| ||||||| |||| || | ||||| Sbjct 4479 GAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTC 4420 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 ||||| ||| ||||||||||||| | ||||| |||| Sbjct 4419 AAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGA 4382 Score = 163 bits (180), Expect = 5e-35 Identities = 253/354 (71%), Gaps = 8/354 (2%) Strand=Plus/Minus Query 245288 CCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATG 245347 |||||||| |||||||||||||||||| ||||| |||||| |||||||| || Sbjct 4131 CCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCCTCGATC 4072 Query 245348 CTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAG 245407 |||| ||||||| ||||||| ||||| || |||||||| || || ||| | | Sbjct 4071 GAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGAGTGCCGGCG 4012 Query 245408 TTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGAACCCGTACGTCTG 245466 ||||| || || ||| |||||||||| ||| ||| ||| ||| | || |||| |||| Sbjct 4011 TTGAAGAGCGTCGGGGTGGCGTGGGTGAAG-AGCTGCTGCGACAAGAGGTCGTAGGTCTC 3953 Query 245467 GAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCT 245525 || || ||| ||||||||| ||| | | ||| ||| | |||||| |||||| Sbjct 3952 GATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGATGGC-CACGCGCATGAGCATGTGCT 3894 Query 245526 GGGGCGTCTCGATGGGTCCCTCGGGTC--CCTTGAGCATGTAGGAGCGCTCGAGCGTCTT 245583 |||| ||||| | | | ||| || ||| | ||||||||||||||| ||||| Sbjct 3893 GGGGACGCTCGA--CGATCTTGCCGTCGACCCTGAAGAGGTAGGAGCGCTCGAGGGTCTT 3836 Query 245584 GAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAG 245637 ||| |||||||| | |||| |||||| | || | ||| || || ||||| Sbjct 3835 GAAGCCAAAGTAGGTGTAGTTGAAGTCGCGCTCGTACTTGATCGCGGCCTCGAG 3782 >seq4651 Length=3183 Score = 426 bits (472), Expect = 3e-114 Identities = 618/864 (72%), Gaps = 24/864 (3%) Strand=Plus/Plus Query 42291 CACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAG 42350 |||||| ||||||| |||||||||||||| || |||| |||||| |||||||| Sbjct 1032 CACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAA 1091 Query 42351 ATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTC 42410 | || ||| | |||| | |||||| || || | |||| | | ||| Sbjct 1092 GTCGATCTGAGCTCCGACATGAAGCACTGGGAATCGCTCAACAACGACGAGAGGCACTTC 1151 Query 42411 CTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCC 42470 |||| || | ||||||||||||| || |||||||| || ||||| || ||| Sbjct 1152 ATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTCGCC 1211 Query 42471 ACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATA 42530 | | |||||||| ||||||||| ||||||||||||||||||||||| || || Sbjct 1212 GGCCGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCGCTGCTTCTACGGCTTTCAAATC 1271 Query 42531 GCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGAT 42590 ||||| |||||| | ||||| ||| ||||| | || || |||| ||| || ||| Sbjct 1272 GCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGACACCTACGTCAAGGAC 1331 Query 42591 CCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAG 42650 |||||||| || | || ||| ||||| ||||| |||||| ||||||||||| Sbjct 1332 TCCGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTCAAGAAGAAG 1391 Query 42651 GCGGACTGGGCGCTCAACTGGATCGA----GAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 || ||||||||| | || |||||| | ||| || || || |||| |||| | || Sbjct 1392 GCCGACTGGGCGATGAAGTGGATCAACAAGGAG-GGCGTCGAGACCTTCGCCGAGCGTCT 1450 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 || | || ||||||||||||||||||||||||| ||| |||| |||||||||||| Sbjct 1451 CGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCATCTTCTG 1510 Query 42767 GCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 ||||||| || || || |||||||| ||| ||||| ||||| | |||||| | | Sbjct 1511 GCTCAAGAAGCGCGGCCTC-ATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCG 1569 Query 42826 ACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC 42885 | ||||| || || | ||||| ||||||||||| | | | | | | ||| |||||| Sbjct 1570 ATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCATGCTCGTCA---ACAAGC 1626 Query 42886 CCTCGAAGGAGCGGGTCCGGGC-CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 |||||| || || | || || |||||| ||||| || ||||| |||||||| ||| Sbjct 1627 CCTCGACCGA-CGTGCCCAAGCAGATCATCCTCGAGGCTGTCGAGATTGAGAAGGAATTC 1685 Query 42945 CTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTAC 43004 | || ||||||| |||||| |||| ||||||||||| ||||||||||||| ||||| Sbjct 1686 GTGACCGAGTCGCTCCCCGTGGCCCTCATCGGCATGAACGCCGACCTCATGTGCCAGTAC 1745 Query 43005 ATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC------CTCTAC 43058 ||| ||| ||||||||||| ||||| ||| | ||| || || | |||| Sbjct 1746 ATCGAGTTCGTCGCCGACCGCCTCCT-CGCC-----GCCCTCGGCTGCGACAAGCACTAC 1799 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 ||| | | ||| ||| | |||||| |||||| | ||||||||||||||||| Sbjct 1800 AACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAGGGCAAGACCAACTTC 1859 Query 43119 TTCGAGAAGCGCGTCGCCGACTAC 43142 ||||| ||||||| ||| ||| Sbjct 1860 TTCGAACGCCGCGTCGGCGAGTAC 1883 >seq5429 Length=2795 Score = 93.3 bits (102), Expect = 8e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 42918 GAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGC 42977 |||| || ||||| ||||||||||| ||| | ||| ||| | ||| || | ||| Sbjct 2492 GAGGTTGTTGAGATTGAGAAGGAGTTTGTCATGGAGTTGCTCCTGGTGGTGCTCATTGGC 2433 Query 42978 ATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCA 43036 ||||| | |||||||||| ||||||| ||| ||| | |||||||| | |||| Sbjct 2432 ATGAATGTGGGCCTCATGTGCCAGTACATTGAGTTTGTCACTGACCATCTGCTTGTGGTG 2373 Query 43037 GATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTC 43096 ||||| | | | ||||||||| | ||||||| || |||||| ||||| Sbjct 2372 CTTGGGT-GCGACAAACACTACAACACCATGAACCCCTTCCCCTGGATGGAGCTGATCTC 2314 Query 43097 GTTGGAGGGCAAGACCAACTTTTTCGAG 43124 ||||||||||||||||||| || ||| Sbjct 2313 ACTGGAGGGCAAGACCAACTTCTTTGAG 2286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944125566864480