Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq7266 96.9 3e-15 seq85 91.5 1e-13 seq6806 87.8 1e-12 seq4204 86.0 5e-12 seq3858 84.2 2e-11 seq7588 82.4 6e-11 seq6713 82.4 6e-11 >seq7266 Length=2119 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || ||| ||||||||| |||||||| || ||| Sbjct 1598 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1539 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| ||||| || || || ||||||||||| || Sbjct 1538 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCGGGAGGG 1479 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || |||||||| | | ||| | |||| | || ||| Sbjct 1478 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATGGTATCGCTCGACTCGAC 1420 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 |||| || || || || ||||| || || ||||| |||||||||||| || Sbjct 1419 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTGTT 1368 >seq85 Length=20598 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||||||| ||||| || || ||| ||||||||| |||||||| || ||| Sbjct 5454 CCTCCGCGGAGCCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 5513 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || |||| || | |||||||| ||||| |||||||||||||| || Sbjct 5514 AGTGTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 5566 >seq6806 Length=2266 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || || || || ||||| || ||||||||| |||||||| || |||| | || | Sbjct 2232 AGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGG 2173 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | |||||||| || || || || ||||||||||| || | || ||| Sbjct 2172 C-CGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTC 2114 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCG 34087 |||||| || || ||||| | | ||| | |||| | || ||| |||| | Sbjct 2113 CTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGG 2055 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | || || || ||||| || || ||||| ||||| |||||| || Sbjct 2054 TGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTT 2011 >seq4204 Length=3449 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || |||||| ||||||||| |||||||| || || | || Sbjct 228 AGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGG 169 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| ||| || | || ||| Sbjct 168 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 109 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | | || | || ||| |||| || Sbjct 108 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATAGTGTCGCTCGACTCGACCTCGAGAGT 50 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || ||||| ||||| ||||| Sbjct 49 AATCGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 11 >seq3858 Length=3670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || ||| ||||||||| |||||||| || ||| Sbjct 936 CCACCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 877 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| || || || || || |||||||||||| || Sbjct 876 AGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGATCCGGGGGG 817 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| || |||||||| | | ||| | |||| | || ||| Sbjct 816 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTCTCGATGGTATCGCTGGACTCGAC 758 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || || || ||||| ||||| Sbjct 757 CTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 710 >seq7588 Length=2028 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || |||||| ||||||||| |||||||| || |||| || Sbjct 251 AGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 192 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || || ||||||||||| ||| | || || Sbjct 191 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGCGGGATGCCTTCC 132 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | | || | || ||| |||| || Sbjct 131 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGAGT 73 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || || || ||||| ||||| Sbjct 72 AATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 34 >seq6713 Length=2293 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || || |||||| || |||||||| || |||| || Sbjct 228 AGACGGAGGACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTACGG 169 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| ||| || | || ||| Sbjct 168 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 109 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| || || ||||| | | ||| | |||| | || ||| |||| || Sbjct 108 TTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTATCGCTCGACTCGACCTCGAGAGT 50 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || || ||||| ||||| ||||| Sbjct 49 AATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396974820194596