Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7588 161 2e-34 seq4204 161 2e-34 seq1785 158 3e-33 seq3858 156 1e-32 seq15283 143 6e-29 seq6454 134 3e-26 seq140 123 6e-23 seq6713 114 3e-20 seq85 91.5 3e-13 seq6105 86.0 1e-11 >seq7588 Length=2028 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | |||| || || ||||| || |||||||| Sbjct 260 CCACCACGAAGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 201 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| |||||||| ||| ||| Sbjct 200 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGCGGG 141 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| ||| |||||||| || || | ||||| || || || Sbjct 140 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACC 81 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || |||||||| |||||||| ||||||||||| |||||||| Sbjct 80 TCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 34 >seq4204 Length=3449 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| || | |||| || || ||||| || ||||||||| Sbjct 237 CCACCGCGGAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 178 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| || ||||| || ||| Sbjct 177 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 118 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| |||||||| || |||| |||||||| || || Sbjct 117 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATAGTGTCGCTCGACTCGACC 58 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || |||||||| || || || ||||| ||||| |||||||| Sbjct 57 TCGAGAGTAATCGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 11 >seq1785 Length=5934 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| ||||| |||| ||| || || ||||| || ||||||||| Sbjct 4350 CCGCCACGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 4409 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || || ||||| |||||||| || ||| Sbjct 4410 AGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGG 4469 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || |||||||| ||| || |||||||| || || | ||||| || || || Sbjct 4470 ATGCCTTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATCGTGTCGCTGGACTCGAC 4528 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||| |||||||| ||||||||||| || |||||| Sbjct 4529 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCATT 4577 Score = 143 bits (158), Expect = 6e-29 Identities = 162/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| ||||| || | |||| || || ||||| || |||||||| || ||||| ||||| Sbjct 4136 AAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTC 4195 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 || | || || || |||||||| |||||||| ||| || ||| || || || || Sbjct 4196 CTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGA---TCCGGGGGAATACCCTCCTT 4252 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 |||||||| ||| |||||||| || || | ||| ||| || || ||||| ||||| Sbjct 4253 GTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGAGTGAT 4312 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||||||||| |||||||| Sbjct 4313 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4348 >seq3858 Length=3670 Score = 156 bits (172), Expect = 1e-32 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || ||||| || | ||| || || ||||| || |||||||| Sbjct 936 CCACCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 877 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||| |||||||| ||| ||| Sbjct 876 AGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGATCCGGGGGG 817 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || |||||||| ||| |||| |||||| || || | |||||| || || || Sbjct 816 ATGCCCTCCTTGTCCTGGATCTTTTGCTT-CACGTTCTCGATGGTATCGCTGGACTCGAC 758 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 757 CTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 710 >seq15283 Length=765 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || ||||| || | ||| || || ||||| || ||||| ||| Sbjct 227 CCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 168 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| |||||||| || ||| Sbjct 167 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 108 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| |||||||| || || | ||||| || || || Sbjct 107 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACC 48 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 47 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1 >seq6454 Length=2394 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || ||||| || | || ||| || ||||| || ||||||||| Sbjct 68 CCTCCGCGAAGACGGAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCG 127 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||| || ||||| ||| | ||| Sbjct 128 AGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGATCAGGGGGG 187 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| || ||||| || || | |||||||| || || Sbjct 188 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATCGTGTCGCTCGACTCAACC 247 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 248 TCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 294 >seq140 Length=17166 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| || ||||| || | || || || ||||| || |||||||| Sbjct 1210 CCACCACGCAGTCGCAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1269 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||| || ||||| || ||| Sbjct 1270 AGAGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 1329 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || |||||||| ||| |||||||| || || | || |||| || Sbjct 1330 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGCTC---TCG 1386 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 1387 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 1436 >seq6713 Length=2293 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || ||||| || | || || || ||||| || ||||| || Sbjct 465 CCACCACGGAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCC 406 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || |||||||| |||||||| || ||| Sbjct 405 AGGGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 346 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || |||||||| ||| |||||||| || || | || |||| || Sbjct 345 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGCTC---TCG 289 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 288 ACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 239 >seq85 Length=20598 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || || |||||||| ||| |||||||| || || | ||| |||||||| ||| Sbjct 5665 CCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGGAGGATTCTACCTCG 5724 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||| ||||| |||||||||||||| ||||| || ||||| ||| Sbjct 5725 AGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATTTGCATGATG 5772 >seq6105 Length=2518 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 288252 GCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGT 288311 ||| || | ||| ||||| || | ||| || || ||||| || | |||||| || || Sbjct 2036 GCGAAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTGGTCGGCCAGGGT 2095 Query 288312 GCGTCCGTCTTCT---AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGAT 288368 ||| ||||| || | || || || |||||||| || ||| | || ||||| Sbjct 2096 GCGGCCGTCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCAGCTGGTCGGGCGGGAT 2155 Query 288369 TCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTC 288428 ||| | || ||| ||| ||| | ||| | || || | | ||||| || || || Sbjct 2156 GCCTCCCTTGTCCAGGAGCTTCTGCTGCACCTCCTCAATCGTGTAGCTCGGCTCGACCTC 2215 Query 288429 GAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||| || | || || |||||||| ||||| ||||||||| Sbjct 2216 GAGCGTGATGGTATGGCCCGTGAGAGTCTTCACGAAGATCTGCATT 2261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179380861000444