Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4651 127 5e-24 >seq4651 Length=3183 Score = 127 bits (140), Expect = 5e-24 Identities = 288/431 (67%), Gaps = 4/431 (1%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||||||||||| | | ||| || || || | || ||||| || ||| Sbjct 1437 TTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTC 1496 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||| ||||||| ||||| ||| || | ||||| ||||||| | ||||||| Sbjct 1497 TGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAG 1556 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 | ||||| ||||| |||||||| ||| | |||| || | || | | |||| Sbjct 1557 ATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCATGCTC 1616 Query 243469 CAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAA 243528 ||||||| | ||| | ||| || |||||| || || || || | || Sbjct 1617 GTCAACAAGCCCTCGACCGACGTGCCCAAGCAGATCATCCTCGAGGCTGTCGAGATTGAG 1676 Query 243529 AAGGAATTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCA 243586 ||||||||| | ||| |||| | ||| || || ||||||||| | || |||| Sbjct 1677 AAGGAATTCGTGACCGAGTCGCTCCCCGTGGCC--CTCATCGGCATGAACGCCGACCTCA 1734 Query 243587 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG 243646 || | ||||||||||| ||||| ||||||||| | || ||| || || | || || Sbjct 1735 TGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGCGACAAGC 1794 Query 243647 TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTA 243706 |||||| | ||||| || | | ||||||||||| || || | || || || | Sbjct 1795 ACTACAACCAGACCAACCCGTTCCCGTGGATGGAGCTCATCTCCCTCGAGGGCAAGACCA 1854 Query 243707 ACTTCTTCGAA 243717 ||||||||||| Sbjct 1855 ACTTCTTCGAA 1865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102624263496300