Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq378 226 3e-54 seq4651 98.7 1e-15 >seq378 Length=11515 Score = 226 bits (250), Expect = 3e-54 Identities = 876/1359 (64%), Gaps = 32/1359 (2%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| || |||||||| |||| |||||| || | |||||||||| Sbjct 5708 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 5649 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | ||||| | | || ||||| ||| ||| | ||| || |||||| || Sbjct 5648 AGCTTGGCAAACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAG 5589 Query 113717 CGTCCA-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 | | | ||||| || ||||| || || | | | | || |||||||| || | Sbjct 5588 -GCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTT 5530 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||| || ||||| || || || ||||| ||| |||| |||| ||||| | Sbjct 5529 GTACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACCGAGCCGTTGTGCGA 5470 Query 113836 GACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 113895 ||| | | ||| | | |||||||| || || | ||| || || || Sbjct 5469 GACGAGCTTGTTCTTGAGCGCGGGCGACCAGAGGCCGCGCTGCTGGAGCTCGCGCAGAAG 5410 Query 113896 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 113955 |||| ||||| || || || || |||||| |||| | ||||| |||||||| Sbjct 5409 GTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGT 5350 Query 113956 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGG 114015 ||| |||||||||||||| ||||| |||| ||| || | ||| ||||| ||||||||||| Sbjct 5349 GTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGG 5290 Query 114016 TGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCA 114075 |||| ||| || ||| || ||||| | | ||| | ||| | | |||| Sbjct 5289 CGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCA 5230 Query 114076 GTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGC 114135 ||| | || | | | | | ||| | || |||||| | || | ||| || Sbjct 5229 GTCCCACCTGTCCGACGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGC 5170 Query 114136 TGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGC 114192 ||||| ||||| | |||| ||| | |||||| |||| ||| | ||| ||| || Sbjct 5169 GGGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAG---GC 5113 Query 114193 CTCGAGGGCTGCGTGATACATTGTCTCAAAAAT-GCGAGCATTCATTGCCTTGGCCTCGT 114251 | ||||| |||| || || ||||| || || ||| | || | | |||||||| Sbjct 5112 GACCAGGGCGGCGTAGTAGATGGTCTCGAAGATGGCGCG-GTTGAGCTCGCGGGCCTCGT 5054 Query 114252 CGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 114311 || || ||| | | || | || || || || || || || || || |||| || Sbjct 5053 CGCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGC 4994 Query 114312 CAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCC 114368 | || || | || | ||| || || || || || ||| |||||| || | || Sbjct 4993 CGATGGGCCTGTGGCGCATGTTCGAGTTGCG---GGCCTCGGGCACGGGGTAGTAGTTGA 4937 Query 114369 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 114428 | ||||| ||| | || || || |||||||| ||||| || || || ||||| | || Sbjct 4936 TGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTGGT 4877 Query 114429 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 114488 || ||||| || | | ||| |||| || || |||| || ||||| || | Sbjct 4876 GGTC-AAACT-CG----CCGTTGGTGATGAACTTGGGCAGCGCGAGCGAGGCCAGGTTGC 4823 Query 114489 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCT 114548 | || | ||| || ||||||| | | ||||| |||| || || || Sbjct 4822 AGACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACT 4763 Query 114549 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGT 114608 ||||||||| | || || || || ||||| ||| || || |||||||| ||||||| Sbjct 4762 GAATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGT 4703 Query 114609 ATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGC--TGG 114666 | ||||| || ||||| | || |||| ||| || || ||| | || ||| || Sbjct 4702 AGGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGA 4643 Query 114667 CACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACT-CTT 114725 | | |||| || || ||||||| |||||| ||| | || |||| ||| Sbjct 4642 CCACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTT 4585 Query 114726 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 114785 ||||| | || | || || || |||| | ||||| ||||| ||||| | || | Sbjct 4584 GCCCCAC-GAGTCGAACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGC 4526 Query 114786 CCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGAC 114845 || ||| || ||||||||||| ||||| || ||||| || | |||||||||| || Sbjct 4525 CCGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAGGCCGTAGAAGAGATCGCG-- 4468 Query 114846 AGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 114903 ||| | |||| || | || || || || || | ||||| | ||| ||||| Sbjct 4467 GGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGC 4408 Query 114904 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 114942 |||||| || || ||||| | |||| | ||||| || Sbjct 4407 GTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 4369 Score = 123 bits (136), Expect = 3e-23 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 || || || || ||| |||| ||||| | ||||||| | |||| || ||||||| || Sbjct 4137 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCC 4078 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 ||||||||||| |||| | | || |||||||| ||||| || || | || || Sbjct 4077 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGAGTG 4018 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 115249 || ||||||||||| || || || |||||| |||| | || |||| |||||| Sbjct 4017 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 3958 Query 115250 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATG 115309 ||||| | |||||||| |||| ||| ||| | ||||| | || ||||| | |||| Sbjct 3957 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGATGGCCACGCGCATGAGCATG 3898 Query 115310 TATTGGGG 115317 | ||||| Sbjct 3897 TGCTGGGG 3890 >seq4651 Length=3183 Score = 98.7 bits (108), Expect = 1e-15 Identities = 191/278 (69%), Gaps = 7/278 (3%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| ||||| || ||| ||| | || || |||| || || |||||||| || Sbjct 1583 GTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCC 1524 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | || || || ||||||||||| ||||| || Sbjct 1523 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGC 1464 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGA----CTTTGTGTCAAACCACTTCA 126233 ||||| | | ||||||||| || |||| | ||| || ||| | |||||||| Sbjct 1463 GGCGAATCCGACGAGACGCTCGGCGAAGG-TCTCGACGCCCTCCTTGTTGATCCACTTCA 1405 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 126293 ||||||| | ||||| |||| || | || ||||||| ||| || ||||| | Sbjct 1404 TCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGT 1345 Query 126294 TCTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAG 126330 ||| || || ||| || |||| ||| | || ||||| Sbjct 1344 CCTTCTC-GACGGAGTCCTTGACGTAGGTGTCGATGAG 1308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597218463681840