Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq378 379 2e-100 >seq378 Length=11515 Score = 379 bits (420), Expect = 2e-100 Identities = 929/1394 (67%), Gaps = 48/1394 (3%) Strand=Plus/Plus Query 94156 GGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTG 94215 || ||||| | | | |||||| ||||||| |||| ||||||||||||||||||||| | Sbjct 4357 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 4416 Query 94216 CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGAC 94272 | ||| |||||||| |||||||||||||| || ||||| | ||| | || Sbjct 4417 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGA---GGAGAACCGCGCCCGCGAT 4473 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCC 94332 |||||||||| || ||| | || ||||| || ||||| ||||| |||| | || | Sbjct 4474 CTCTTCTACGGCCTGTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGAC 4533 Query 94333 TGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTT 94392 ||| || ||||| ||||| || ||||| |||| |||| || || | || Sbjct 4534 TGGTCGCTCTTTTGCCCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTC 4593 Query 94393 GAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC---CAGGAAGGTTATGGATGCT 94449 || || ||| | || ||||| | ||||| || | | ||| | || | Sbjct 4594 GAGGAGAAGTACGAGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGC--CC 4651 Query 94450 AGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTG 94509 |||| ||||||| ||| | || ||| | ||||| || ||||||||||| || Sbjct 4652 AGGA-GCTGTGGTTCGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTG 4710 Query 94510 TTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCG 94569 | ||||||| | ||||| |||||||||||||||||||||||| || || ||| Sbjct 4711 TACAAGGACGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATTCAGTCGTCG 4770 Query 94570 AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTG 94629 || |||||||| ||| | ||| |||| || || || |||||| | || || || |||||| Sbjct 4771 AACCTGTGCACGGAGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTCTGCAACCTG 4830 Query 94630 GGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGAT 94689 | ||| || ||| ||| ||| | ||| | || || ||| || Sbjct 4831 GCCTCGCTCGCGCTGCCCAAGTTCAT------------CAC--CAACGGCGA-GTTTGAC 4875 Query 94690 CTGGAGGAGCTTGTGAACTTCG-CGGGAAGGATGGTCTT---GAACCTGAACAGGGTAAT 94745 | || |||| | || || || ||||| ||||| |||||| |||| ||| || Sbjct 4876 CACCAGAAGCT---GCACGACGTCGTGAAGG-TGGTCACCAAGAACCTCAACAAGGTGAT 4931 Query 94746 CGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCAT 94805 ||||| |||| ||||||||| || ||||| ||||| ||| || || ||||||| Sbjct 4932 CGACATCAACTACTACCCCGTGCCCGAGGCCCGCAACTCGAACATGCGCCACAGGCCCAT 4991 Query 94806 CGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTC 94865 ||||||||| || ||||| | || |||| | |||| ||||| | || | || Sbjct 4992 CGGCATCGGAGTGCAGGGCCTGGCCGACGTCTTCATGATCATGCGCCACCCGTGGGAGAG 5051 Query 94866 TGTCGACGCG-GCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGA 94924 | ||| || ||| | | | | ||| ||||| | ||| || |||| ||| || Sbjct 5052 CGACGAGGCCCGCGAGCTCAACCGCGC-CATCTTCGAGACCATCTACTACGCCGCCCTGG 5110 Query 94925 AACAATCCGTCCACTTGGC-CAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCG 94983 || | | | || ||| ||| | ||| | || || | | | || ||| Sbjct 5111 TCGCCTCGAACGAGCTCGCGCAGGTCG-AGGGCAC-CTACCAGA--CCTACGAGGGCTCG 5166 Query 94984 CCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTAC 95043 ||| | |||||| | ||| |||||||||||| || ||| |||| || Sbjct 5167 CCCGCGTCCAAGGGCAAGCTCCAGCCCGACCTCTGGGGCGTCGTGCCGTCGGACAGGTGG 5226 Query 95044 GACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTG 95103 ||||||| | || ||||| | | | | |||||| || ||| |||| || ||| Sbjct 5227 GACTGGGCCACGCTCCGCGCCAACATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTG 5286 Query 95104 GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCC 95163 || ||||||||||||||||| || |||||||||| ||||||||||||| || || ||| Sbjct 5287 GCGCCCATGCCCACGGCCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCC 5346 Query 95164 TTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | ||| ||||| | |||| | | || | |||||||| || ||| ||||| ||||| || Sbjct 5347 TACACGACCAACATCTACACCCGCCGCATCCTCGCCGGCGACTTCACCGTCGTCAACGAG 5406 Query 95224 CACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTG 95283 ||||| || || || || | | || | ||| | | |||||||| | || Sbjct 5407 CACCTTCTGCGCGAGCTCCAGCAGCGCGGCCTCTGGTCGCCCGCGCTCAAGAACAAGCT- 5465 Query 95284 CTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCT 95342 | | ||| ||||||||| |||||| |||| | | || || || ||||||||| ||| Sbjct 5466 CGTCTCGCACAACGGCTCGGTCCAGCGCATCGAGGAGATCCCCGACGACATCAAGAAGCT 5525 Query 95343 CTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGG 95402 |||||||||||||||||| ||||||||||||| || ||||| || |||| ||| Sbjct 5526 GTACAAGACCGTGTGGGAGCTCCCGCAGCGCGTCATCATCGACATGGCCGCCGATCGCTC 5585 Query 95403 GCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCG--CGGA 95460 | ||| |||| |||||| |||| ||||||| ||| | Sbjct 5586 GGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCC--TCGTTTGCC 5643 Query 95461 AAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTAT 95520 || | || || ||| ||||||| ||| | ||||| ||||||||||| ||||| || Sbjct 5644 AAGCTCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTAC 5703 Query 95521 TTGCGAACCAGGCC 95534 | || ||| |||| Sbjct 5704 CTTCGCACCCGGCC 5717 Score = 167 bits (184), Expect = 2e-36 Identities = 298/435 (69%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| || || ||| || |||||| ||| | | || |||| | | | Sbjct 3824 TACTTTGGCTTCAAGACCCTCGAGCGCTCCTACCTCTTCAGGGTCGACGGCAAGATCGTC 3883 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 ||||| || || || |||| |||||||| |||||||| | ||| || |||| || Sbjct 3884 GAGCGTCCCCAGCACATGCTCATGCGCGTGGCCATCGGCCTGCACAAGGACAACATCCCC 3943 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 || | | | | | | || | | || | ||| ||||||||||| Sbjct 3944 GCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACG 4003 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAG 93963 || |||||||| || || ||| || ||| |||| ||||| |||||| | || | ||| Sbjct 4004 CTCTTCAACGCCGGCACTCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAG 4063 Query 93964 GCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATAC 94023 | ||||| ||| || || | ||||| ||||||| | || || |||||| || | Sbjct 4064 GAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGTCG 4123 Query 94024 GCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGT 94083 || || || ||||| || | ||| | | || ||| || ||||||||||| Sbjct 4124 GCCGGCGGCATCGGCCTCGCCGCGCACCGCATCCGCGCCTCCAACTCGTACATCCGCGGC 4183 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 ||||| |||||||||||||| ||| |||| |||||||| |||| |||| || | || ||| Sbjct 4184 ACCAACGGCACCTCCAACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCCCGC 4243 Query 94144 TACGTGGACCAGGGT 94158 ||||| ||||| ||| Sbjct 4244 TACGTCGACCAAGGT 4258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494611281244080