Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6713 84.2 2e-11 seq4204 84.2 2e-11 >seq6713 Length=2293 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||||||||| || || ||| | ||| || || Sbjct 219 ACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCG 160 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | || | || ||||||||||| || ||||| || || || || Sbjct 159 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 100 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || || | || | || | ||| ||| |||||||| |||||||||| ||| || Sbjct 99 ATCTTCTGCTTCA-CGTTCTCGATGGTATCGCTCGACTCGACCTCGAGAGTAATCGTCTT 41 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || || || ||||| Sbjct 40 ACCGGTCAGGGTCTTCACGAAGATCTGCAT 11 >seq4204 Length=3449 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || ||||| || ||||| ||||| || || ||| | Sbjct 237 CCACCGCGGAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 178 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | || || || ||| | || | || ||||||||||| || Sbjct 177 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 118 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | |||||| |||||||| Sbjct 117 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATAGTGTCGCTCGACTCGAC 59 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||| ||| || || || || || || || || || ||||| Sbjct 58 CTCGAGAGTAATCGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451900945576080