Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq378 235 7e-57 seq4651 95.1 1e-14 >seq378 Length=11515 Score = 235 bits (260), Expect = 7e-57 Identities = 878/1359 (65%), Gaps = 32/1359 (2%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| || |||||||| |||| |||||| || | ||||| |||| Sbjct 5708 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 5649 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||||| | | || ||||| ||| ||| | ||| || |||||| || Sbjct 5648 AGCTTGGCAAACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAG 5589 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 ||||| || ||||| || || | | | | || |||||||| || || Sbjct 5588 GCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTG 5529 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTG 115797 || || ||||| || || || ||||| ||| |||| |||| ||||| | | Sbjct 5528 TACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACCGAGCCGTTGTGCGAG 5469 Query 115798 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGG 115857 || | | ||| | | |||||||| || || || ||| || || ||| Sbjct 5468 ACGAGCTTGTTCTTGAGCGCGGGCGACCAGAGGCCGCGCTGCTGGAGCTCGCGCAGAAGG 5409 Query 115858 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTG 115917 |||| ||||| || || || || |||||| |||| | ||||||||||||||| Sbjct 5408 TGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTG 5349 Query 115918 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 115977 || |||||||||||||| ||||| |||| ||| || | || ||||| ||||||||||| Sbjct 5348 TAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGC 5289 Query 115978 GCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAG 116037 |||| ||| || |||||| ||||| | ||| | ||| | | ||||| Sbjct 5288 GCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAG 5229 Query 116038 TCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCT 116097 || | || | | | | | |||| | || |||||| | || | |||||| Sbjct 5228 TCCCACCTGTCCGACGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCG 5169 Query 116098 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCTCGCC 116154 ||||| ||||| | |||| || | |||||| |||| ||| | ||| ||| || Sbjct 5168 GGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAG---GCG 5112 Query 116155 TCGAGGGCTGCGTGATACATTGTCTCAAAAAT-GCGAGCATTCATTGCCTTGGCCTCGTC 116213 | ||||| |||| || || ||||| || || ||| | || | | ||||||||| Sbjct 5111 ACCAGGGCGGCGTAGTAGATGGTCTCGAAGATGGCGCG-GTTGAGCTCGCGGGCCTCGTC 5053 Query 116214 GGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 116273 | || ||| | | || | || || || || || || || || || |||| ||| Sbjct 5052 GCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCC 4993 Query 116274 AATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCT 116330 || || | || | ||| || || || || || ||| |||||| || | || | Sbjct 4992 GATGGGCCTGTGGCGCATGTTCGAGTTGCG---GGCCTCGGGCACGGGGTAGTAGTTGAT 4936 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 116390 ||||| ||| | || || || |||||||| ||||| || || || ||||| | || Sbjct 4935 GTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCTGGTG 4876 Query 116391 ATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 116450 || ||||| || | | ||| |||| || || |||| || ||||| || || Sbjct 4875 GTC-AAACT-CG----CCGTTGGTGATGAACTTGGGCAGCGCGAGCGAGGCCAGGTTGCA 4822 Query 116451 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 116510 || | ||| || ||||||| | | ||||| |||| || || || Sbjct 4821 GACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTG 4762 Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570 ||||||||| | || || || || ||||| ||| || || |||||||| ||||| || Sbjct 4761 AATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTA 4702 Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGC--TGGC 116628 ||||| || ||||| | || |||| ||| || || ||| | || ||| || | Sbjct 4701 GGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGAC 4642 Query 116629 ACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACT-CTTC 116687 | |||| || || ||||||| |||||| ||| |||| |||| ||| Sbjct 4641 CACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTG 4584 Query 116688 ACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACC 116747 ||||| | || | || || || |||| | || || ||||| ||||| | || || Sbjct 4583 CCCCAC-GAGTCGAACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCC 4525 Query 116748 CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGATCCCGAC 116806 | ||| || ||||||||||| ||||| || ||||| || |||| |||||||||| || Sbjct 4524 CGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAG-GCCGTAGAAGAGATCGCG-- 4468 Query 116807 AGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864 ||| | |||| || | || || || || || | ||||| | ||| ||||| Sbjct 4467 GGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGC 4408 Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG 116903 |||||| || || ||||| | |||| | |||||||| Sbjct 4407 GTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 4369 Score = 114 bits (126), Expect = 2e-20 Identities = 174/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 || || || || ||| |||| ||||| | ||||||| | |||| || ||||||| || Sbjct 4137 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCC 4078 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 ||||||||||| |||| | | || |||||||| ||||| || || | || || Sbjct 4077 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGAGTG 4018 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAG 117210 || ||||||||||| || || || |||||| |||| | || |||| |||||| Sbjct 4017 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 3958 Query 117211 GTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATG 117270 ||||| | || | ||| |||| ||| ||| | ||||| | || ||||| | |||| Sbjct 3957 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGATGGCCACGCGCATGAGCATG 3898 Query 117271 TATTGGGG 117278 | ||||| Sbjct 3897 TGCTGGGG 3890 >seq4651 Length=3183 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/277 (68%), Gaps = 5/277 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| ||||| || ||| ||| | || || |||| || || |||||||| || Sbjct 1583 GTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCC 1524 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || ||| ||||||||||| ||||| || Sbjct 1523 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGC 1464 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG---AGCGGGACTTTGTATCAAACCACTTCAT 127707 ||||| | | ||||||||||| |||| | | || | | | ||||||||| Sbjct 1463 GGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCAT 1404 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 127767 |||||| | ||||| |||| || | || ||||||| ||| || ||||| | Sbjct 1403 CGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTC 1344 Query 127768 CTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAG 127803 ||| || || ||| || |||| ||| | || ||||| Sbjct 1343 CTTCTC-GACGGAGTCCTTGACGTAGGTGTCGATGAG 1308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613368409333680