Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4651 190 3e-43 seq378 185 1e-41 >seq4651 Length=3183 Score = 190 bits (210), Expect = 3e-43 Identities = 548/836 (66%), Gaps = 19/836 (2%) Strand=Plus/Minus Query 159653 TCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTC 159712 ||||| ||||||||||||||||| | ||| || ||||| || ||| ||||| || Sbjct 1864 TCGAAGAAGTTGGTCTTGCCCTCGAGGGAGATGAGCTCCATCCACGGGAACGGGTTGGTC 1805 Query 159713 ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATG 159772 || ||| |||| | ||||| || || || | | ||| || || || |||||| Sbjct 1804 TGGTTGTAGTGCTTGTCGCAGCCGAGGGCGGCGAGGAGGCGGTCGGCGACGAACTCGATG 1745 Query 159773 TAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGA 159832 || ||||| | || ||| || || | || |||||||||| || | || Sbjct 1744 TACTGGCACATGAGGTCGGCGTTCATGCCGATGAGGGCCACGGGGAGCGACTCGGTCACG 1685 Query 159833 AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGA-CACGTTCGTACCCCGG 159891 || ||||||||||||||||| || ||| | |||||| | ||||| || | || Sbjct 1684 AATTCCTTCTCAATCTCGACAGCCTCGAGGATGATCTGCTTGGGCACGTCGGT-CGAGGG 1626 Query 159892 CTTGC---CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 |||| | | ||| || | |||||||| || ||||||||||| || ||||| Sbjct 1625 CTTGTTGACGAGCATGGTGT------AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTC 1572 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 || || ||| | |||||| | | |||||| ||||||| || ||| ||||| Sbjct 1571 ATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAG 1512 Query 160009 CCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 ||| || |||| ||| |||| ||| || ||||| ||||| ||||| || || | | Sbjct 1511 CCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGA 1453 Query 160068 CGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGT---CCACCTTTTGGCCCATTCAG 160124 |||| | ||| | || | || | || | | | |||| | | ||||| || | Sbjct 1452 CGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGG 1393 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 ||||||| || | |||| | ||||| |||| || | | ||||| ||| Sbjct 1392 CCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGG 1333 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGG 160244 ||||||| || | || || ||||||||| || | ||| | || ||||||| Sbjct 1332 AGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTACATCTCGGAGTGGATGTTCTCGATGG 1273 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTT 160304 | || |||||| |||||| | |||||| | ||||||||||| |||| | Sbjct 1272 CGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGAAGCGGC 1213 Query 160305 GACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGA 160364 | ||||| | || | |||||| ||||| ||||| ||||| ||||| || Sbjct 1212 CGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGACGTGCTTGA 1153 Query 160365 TGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAAT 160424 |||| || |||||||| |||||||| | ||||||||| ||| ||| | || || Sbjct 1152 TGAAGTGCCTCTCGTCGTTGTTGAG---CGATTCCCAGTGCTTCATGTCGGAGCTCAGAT 1096 Query 160425 CAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATG 160480 | || || || || |||| || |||| || | |||||||| |||||||| Sbjct 1095 CGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATG 1040 >seq378 Length=11515 Score = 185 bits (204), Expect = 1e-41 Identities = 523/779 (67%), Gaps = 26/779 (3%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || |||||||| || ||||| |||| |||| | | | || ||||||||||||||| Sbjct 5747 TCGACGGTGAACTGGATCGCGTTGGCGGCGGGCCGGGTGCGAAGGTAGTACATGCCGGTC 5688 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGGGTC 203961 || |||||||| |||| |||| | |||||| || | || || || ||| ||| || Sbjct 5687 TTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCAAACG-AGGGCTC 5629 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 | |||||| | ||| || |||||||| ||||||||| | | || ||||| |||||||| Sbjct 5628 GCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGATCGGCGGCCAT 5569 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGT-GT 204079 | ||| ||| ||||| | ||||||||| |||||| ||| | ||| || ||| || Sbjct 5568 GTCGATGATGACGCGCTGCGGGAGCTCCCACACGGTCTTGTACAGCTTCT-TGATGTCGT 5510 Query 204080 TGAGGCACATCTTC-CCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCG 204137 | || |||| | | | | || || ||||||||||| | | || | || | Sbjct 5509 CGGGG---ATCTCCTCGATGCGCTGGACCGAGCCGTTGTGCGAGACGAGCTTGTTCTTGA 5453 Query 204138 TCTCCTCCCCCCACATGCCCAACCTGAT-CAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | | | ||| | | || ||| | ||||| |||| ||||| ||||| || Sbjct 5452 GCGCGGGCGACCAGA-GGCCGCGCTGCTGGAGCTCGCGCAGAAGGTGCTCGTTGACGACG 5394 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 ||||| |||| || | | |||||| | | |||| | ||| | || || || | Sbjct 5393 GTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCAC 5334 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 ||||||||||| | ||||| | ||| ||||||||||||||| |||| ||| || ||| Sbjct 5333 TCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGAG 5274 Query 204317 TTGCGCACACCGTATTTTTGGACCCT-GCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||||| ||||| | || | |||| || | || |||||| | | | Sbjct 5273 TTGCGCAGACCGTGCTGGGCGATGTTGGCGC-GGAGCGTGGCCCAGTCCCACCTGTCCGA 5215 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATG-CCTTGACTGAC-TGGGC-TGCCCTT 204432 || |||||||| | |||| ||| | || ||||| ||| |||| ||||| Sbjct 5214 CGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTG---GACGCGGGCGAGCCCTC 5158 Query 204433 GTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATA 204492 ||| ||| | || | || | | || |||| | ||||||| ||| |||| || Sbjct 5157 GTAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAGGCGACCAGGGCGGCGTA 5098 Query 204493 GTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC--CGTTCCGTCAAACGC 204549 ||| |||||||| ||||| | || || | || || |||||| || || || ||| Sbjct 5097 GTAGATGGTCTCGAAGAT-GGCGCGGTTGAGCTCGCGGGCCTCGTCGCTC--TCCCACGG 5041 Query 204550 CAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 | | || || || ||||| |||| ||||||||||||||| || | || |||| Sbjct 5040 GTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGT 4982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794975316014880