Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1075 102 6e-16 seq787 102 6e-16 seq275 100 2e-15 seq12127 95.1 9e-14 seq1485 93.3 3e-13 seq6015 91.5 1e-12 seq1473 91.5 1e-12 seq9848 87.8 1e-11 seq1582 87.8 1e-11 seq16904 86.0 5e-11 seq16222 86.0 5e-11 >seq1075 Length=7598 Score = 102 bits (112), Expect = 6e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 1086817 AACGAACTTATTCCAGAAATTCCTTATGCTCTTAAAATTAAGATGGCTTATCAGGCTTCA 1086876 ||||| || ||||| || || || | ||||| | |||||||| || ||||| | Sbjct 5736 AACGAGCTGATTCCGGACATCCCGTTCGCTCTGCGCAACAAGATGGCCTACCAGGCGGCC 5795 Query 1086877 AAAGGTATGCATTTTCTTCATTCATCAGGTATTGTTCATCGAGATTTGAAGTCGCTTAAT 1086936 || || ||||| || || || || || || || || ||||| ||| | |||||||| ||| Sbjct 5796 AAGGGCATGCACTTCCTCCACTCGTCCGGAATCGTCCATCGCGATCTCAAGTCGCTCAAT 5855 Query 1086937 TTGCTTTTGGATTCAAAATGGAATGTCAAGGTCAGT 1086972 |||||| | || || || ||||| |||||||||||| Sbjct 5856 TTGCTTCTCGACTCCAAGTGGAACGTCAAGGTCAGT 5891 >seq787 Length=8680 Score = 102 bits (112), Expect = 6e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1078773 CATCGTGACATTAAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAAAATTGCC 1078832 || || ||| | ||||| || || | || | || || || ||||| || || | ||| Sbjct 324 CACCGCGACCTGAAGCCGTCGAACCTGCTGGTGGACGAGAACTGGAACGTGAAGGTGGCC 383 Query 1078833 GATTTTGGATTTGCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGGTACTCCT 1078892 || || || ||||| |||||||| || |||||||||| |||||| || || || || || Sbjct 384 GACTTCGGGTTTGCGCGCATCAAGGAGGAGAACGCCACCATGACCCGCTGCGGCACGCCC 443 Query 1078893 TGTTGGACTGCTCCTGAAATTATTCGTAATGATATCTATGACGAAAAGGTCGATGTATTT 1078952 || ||||| || || || || | || || | || ||||| |||| ||| || || Sbjct 444 TGCTGGACCGCGCCCGAGATCCTCCGCGGAGAGAAGTACGACGAGAAGGCCGACGTGTTC 503 Query 1078953 TCTTTTGGAATTGTTATGTGGGAAGT 1078978 || || ||| | | ||||||||||| Sbjct 504 TCGTTCGGAGTCATCATGTGGGAAGT 529 >seq275 Length=13074 Score = 100 bits (110), Expect = 2e-15 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 1078806 GATGAAAATTGGAATGTCAAAATTGCCGATTTTGGATTTGCTCGCATCAAAGAAGAGAAC 1078865 || || || ||||| || || | ||||| |||||||| || |||||||| || |||||| Sbjct 11366 GACGAGAACTGGAACGTGAAGGTGGCCGACTTTGGATTCGCGCGCATCAAGGAGGAGAAC 11425 Query 1078866 GCCATCATGACTCGTTGTGGTACTCCTTGTTGGACTGCTCCTGAAATTATTCGTAATGAT 1078925 || | ||||| || ||||| || ||||| ||||| || || || | || || || Sbjct 11426 GCGACGATGACCCGCTGTGGCACCCCTTGCTGGACGGCACCGGAGGTCATCCGCGGCGAG 11485 Query 1078926 ATCTATGACGAAAAGGTCGATGTATTTTCTTTTGGAATTGTTATGTGGGAAGT 1078978 | || |||||||||| ||| || | || || || || | ||||||||||| Sbjct 11486 AAGTACGACGAAAAGGCCGACGTGTACTCGTTCGGCATCATCATGTGGGAAGT 11538 >seq12127 Length=1187 Score = 95.1 bits (104), Expect = 9e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1076712 GTCAGAGTAATGACAACTTTGCGACATCCTAACGTTGTTCTTTTCATGGCTGCTTCAACA 1076771 || || |||||||| | ||||||| || ||||| || || |||||||| || || || Sbjct 597 GTGAGGGTAATGACGGCGCTGCGACACCCCAACGTGGTGCTGTTCATGGCGGCGTCGACC 656 Query 1076772 AAACCACCCAAAATGTGTATTGTAATGGAATTCATGGCTCTTGGCTC 1076818 || ||||||||||||||||| || ||||| |||||||| || || || Sbjct 657 AAGCCACCCAAAATGTGTATCGTGATGGAGTTCATGGCCCTCGGATC 703 >seq1485 Length=6502 Score = 93.3 bits (102), Expect = 3e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1078773 CATCGTGACATTAAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAAAATTGCC 1078832 || || ||| | ||||| || || | ||| | || || || ||||| || || | ||| Sbjct 6190 CACCGGGACCTCAAGCCGTCGAACCTGCTCGTGGACGAGAACTGGAACGTGAAGGTGGCC 6131 Query 1078833 GATTTTGGATTTGCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGGTACTCCT 1078892 || || || || || |||||||| || |||||||||| |||||| || || || || || Sbjct 6130 GACTTCGGGTTCGCGCGCATCAAGGAGGAGAACGCCACCATGACCCGCTGCGGCACGCCC 6071 Query 1078893 TGTTGGACTGCTCCTGAAATTATTCGTAATGATATCTATGACGAAAAGGTCGATGTATTT 1078952 || ||||| || || || | || || || | || ||||| || ||| || || Sbjct 6070 TGCTGGACGGCGCCGGAGGTGATCCGCGGGGACAAGTACGACGAGCGGGCCGACGTGTTC 6011 Query 1078953 TCTTTTGGAATTGTTATGTGGGAAGT 1078978 || || || | || ||||||||||| Sbjct 6010 TCCTTCGGCGTGGTCATGTGGGAAGT 5985 >seq6015 Length=2559 Score = 91.5 bits (100), Expect = 1e-12 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1076830 TGTTGAAAAACGAACTCATCCCAGATATACCTTTTGCTCTCAAAGTCAAAATCGCATATC 1076889 || || | ||||| || ||| || || || | ||||| || ||||| |||| || | Sbjct 1419 TGCTGCACAACGAGCTGATCGTGGAGATCCCGATCGCTCTGAAGGTCAAGGTCGCCTACC 1478 Query 1076890 AAGCATCAAAGGGTATGCATTTCCTGCATTCATCAGGAATCACTCATCGTGATCTCAAGT 1076949 |||| || ||||| ||||| ||| ||||||| || || ||| ||||| |||||||||| Sbjct 1479 AAGCCTCCAAGGGCATGCACTTCTTGCATTCCTCCGGCATCGTGCATCGCGATCTCAAGT 1538 Query 1076950 CTTTGAATCTACTTCTTGACATTAAGTGGAATGTTAAAGT 1076989 | | || || || || ||| |||||||| || || || Sbjct 1539 CCCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGT 1578 >seq1473 Length=6523 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1076865 GCTCTCAAAGTCAAAATCGCATATCAAGCATCAAAGGGTATGCATTTCCTGCATTCATCA 1076924 ||||| || ||||| |||| |||||||| || ||||| ||||| ||| ||||||| || Sbjct 397 GCTCTGAAGGTCAAGGTCGCCTATCAAGCCTCCAAGGGCATGCACTTCTTGCATTCCTCC 338 Query 1076925 GGAATCACTCATCGTGATCTCAAGTCTTTGAATCTACTTCTTGACATTAAGTGGAATGTT 1076984 || ||| ||||| ||||||||||| | || || || || ||| |||||||| || Sbjct 337 GGCATCGTCCATCGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAACGTC 278 Query 1076985 AAAGT 1076989 || || Sbjct 277 AAGGT 273 >seq9848 Length=1519 Score = 87.8 bits (96), Expect = 1e-11 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1078785 AAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAAAATTGCCGATTTTGGATTT 1078844 ||||| || ||| | ||| |||| || || ||||| || || | ||||| || || || Sbjct 453 AAGCCCTCCAATCTGCTCGTCGACGAGAACTGGAACGTGAAGGTGGCCGACTTCGGGTTC 512 Query 1078845 GCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGGTACTCCTTGTTGGAC 1078900 || |||||||| ||||||||||||| |||||| || || || || || || ||||| Sbjct 513 GCGCGCATCAAGGAAGAGAACGCCACCATGACCCGCTGCGGCACCCCCTGCTGGAC 568 >seq1582 Length=6332 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 1078773 CATCGTGACATTAAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAAAATTGCC 1078832 || || ||| | ||||| || || | ||| | ||||| || ||||| || || | ||| Sbjct 360 CACCGCGACCTCAAGCCGTCGAACCTGCTCGTGGATGAGAACTGGAACGTGAAGGTGGCC 419 Query 1078833 GATTTTGGATTTGCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGGTACTCCT 1078892 || || || || || ||||||||||| ||||| |||| |||||| || || || || || Sbjct 420 GACTTCGGGTTCGCGCGCATCAAAGAGGAGAATGCCACCATGACCCGCTGCGGCACGCCC 479 Query 1078893 TGTTGGACTGCTCCTGAAATTATTCG 1078918 || ||||| || || || || || || Sbjct 480 TGCTGGACGGCGCCGGAGATCATCCG 505 >seq16904 Length=592 Score = 86.0 bits (94), Expect = 5e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1076830 TGTTGAAAAACGAACTCATCCCAGATATACCTTTTGCTCTCAAAGTCAAAATCGCATATC 1076889 || || | || || ||||||||||| | || || || || || || || || || || | Sbjct 191 TGCTGCACAATGAGCTCATCCCAGAGCTGCCGTTCGCGCTGAAGGTGAAGATGGCGTACC 132 Query 1076890 AAGCATCAAAGGGTATGCATTTCCTGCATTCATCAGGAATCACTCATCGTGATCTCAAGT 1076949 | || | ||||| ||||| |||||||| ||||| || ||| || || || ||||||| Sbjct 131 AGGCGGCCAAGGGCATGCACTTCCTGCACTCATCGGGCATCGTGCACCGCGACCTCAAGT 72 Query 1076950 CTTTGAATCTACTTCTTGACATTAAGTGGAATGTTAAAGT 1076989 | | || || || || |||| |||||||| || || || Sbjct 71 CGCTCAACCTGCTGCTCGACAACAAGTGGAACGTCAAGGT 32 >seq16222 Length=657 Score = 86.0 bits (94), Expect = 5e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 1078773 CATCGTGACATTAAGCCATCAAATATTCTCATCGATGAAAATTGGAATGTCAAAATTGCC 1078832 || || ||| | |||||||| || | ||| |||| || | ||||| | || | ||| Sbjct 470 CACCGCGACCTCAAGCCATCGAACCTGCTCGTCGACGAGGACTGGAACCTAAAGGTGGCC 411 Query 1078833 GATTTTGGATTTGCTCGCATCAAAGAAGAGAACGCCATCATGACTCGTTGTGGTACTCCT 1078892 || || || || || ||||||||||| |||||||||| |||||| || || || || || Sbjct 410 GACTTCGGGTTCGCGCGCATCAAAGAGGAGAACGCCACCATGACCCGCTGCGGCACGCCC 351 Query 1078893 TGTTGGACTG 1078902 || ||||||| Sbjct 350 TGCTGGACTG 341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779924317625188