Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2159 394 1e-104 seq232 309 4e-79 seq2360 199 5e-46 >seq2159 Length=5318 Score = 394 bits (436), Expect = 1e-104 Identities = 1069/1630 (66%), Gaps = 12/1630 (1%) Strand=Plus/Minus Query 6523 GTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTT 6582 |||||| ||||| | ||||| ||||||||||| | | | || || || || | || Sbjct 2890 GTAGTTCTCGAGGGCGTTCTTGGCCTCGACCTTCTCCTTGGCGTTCTCGTCGTCGTTCTT 2831 Query 6583 ATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATC 6642 ||||| || || || | |||||| || || || || || || | | ||||| || Sbjct 2830 GTACTTCTCGGCCTCCTTGACCATGCGCTCGATCTCCTCCTTGGAGAGACGGCCCTTGTC 2771 Query 6643 ATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAA 6702 || || || || ||||| ||||| ||| | || ||| || | || | || || | Sbjct 2770 GTTGGTGATGGTGATCTTCTCGGAGCGACCGGTGGTCTTGTCGGCGGCGTTGACGTTGAG 2711 Query 6703 AATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGC 6762 ||||| || || |||| ||||| | || | || || || ||| | || |||| Sbjct 2710 GATACCGTTGGCGTCAATGTCGAAGGTGACCTCGATCTGGGGCACACCGCGGGGCGCGGG 2651 Query 6763 TGGA-ATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTT 6821 || || |||| | || || | || || | |||| || | | | ||| | Sbjct 2650 GGGGGATGCCCGAGAGCTCGAACTTGCCGAGGAGGTTGTTGTCGCGGGTCATGGCACGCT 2591 Query 6822 CACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTT 6881 | || || ||||| | || ||| | || || || || || ||||||| | Sbjct 2590 CGCCCTCGTAGACCTGGATGAGCACGCCGGGCTGGTTGTCCGAGTAGGTGGAGAAGACCT 2531 Query 6882 GTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCA 6941 | ||||| | || || || || || | || || | || |||||| | ||||| Sbjct 2530 GGGTCTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCGCGGTCATGACGCCACCGG 2471 Query 6942 TAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTT---GAACAG 6998 || || | || || | || || || ||||| | ||| | || ||| | || | Sbjct 2470 CGGTCTCAATGCCGAGGGTGAGCGGCGTGACGTCGATGAGGAGCACGTCGCCGAGGACGG 2411 Query 6999 AT---TCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCG 7055 | ||| || |||| | | ||||||||| ||||| | || ||||| ||||| | Sbjct 2410 AGCCCTCGGTCGAGGCACCGCTGAGGATGGCGGCCTGGACGGCGGCACCGTAGGCGACGG 2351 Query 7056 CCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTT 7115 |||| |||||||| |||| || | | || || ||||| || | | | | | | Sbjct 2350 CCTCGTCGGGGTTGATCGACTTGCACGGCTCCTTGCCGTTGAAGAACTGGGTGACGAGCT 2291 Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATT 7175 | || || || ||||| || || || |||||||| | |||| || |||| | | Sbjct 2290 GCTGGATCTTGGGGATACGGGTGGAGCCACCGACGAGCACGACCTCGCTCACGGTGCGCT 2231 Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235 | || ||||| | ||| || || || ||||| || ||||| ||||| | | Sbjct 2230 TGTCCATCTTGGCGTCGCGGAGCACCTTCTCGACGGGGTCCATGGTCGAGCGGAAGAGAT 2171 Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295 | || || ||||| ||||| |||||||| ||||| || ||||| || || || ||| Sbjct 2170 CAGCGCAGAGCTCCTCGAAACGGGCACGGGTGATGGAGGTGTAGAAGTCGACACCCTCGA 2111 Query 7296 ATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCT 7355 | | ||| || || || ||| | || || | | || || | || ||||| || | || Sbjct 2110 AGAGCGAGTCGATCTCGATGTTGGTCTGGGTGGCGGACGAGAGCGCGCGCTTGGCCCTCT 2051 Query 7356 CACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTT 7415 | || || || || | |||||| | ||| || | ||| ||||| || || || | || | Sbjct 2050 CGCAGGCGGTACGGAGACGACGGACGGCGCGGGCGTTGCCGGAGATGTCCTTGCTGTGCT 1991 Query 7416 TACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCA 7475 | || || ||||| | |||||| | | | ||||| || ||||| || | Sbjct 1990 TGCGCTTGAACTCCTGGATGAAGTGGGTGACCATGCGGTTGTCGAAGTCCTCACCGCCGA 1931 Query 7476 AGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACG 7535 ||| || || || ||||| || ||||| || ||||| || | || ||| | | | || Sbjct 1930 GGTGAGTGTCACCAGCGGTGGCCTTGACCTCGAAGATGCCCTCCTCGATGGTCAGGAGCG 1871 Query 7536 AAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGT 7595 | || || || ||||| || || || || || ||||| |||||| | ||| | | | Sbjct 1870 ACACGTCGAAGGTACCGCCGCCGAGATCGAAGATGAGCACGTTCATCTCGCCCTGCGACT 1811 Query 7596 TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAG 7654 |||| ||||||||||||||||| || || || || || || || || ||||| ||| Sbjct 1810 TCTTGTCGAGACCGTACGCGATGGCAGCGGCGGTGGGCTCGTTGATGATACGCTTGAC-C 1752 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 | || ||| | || || | ||||| || || || || || ||||| ||||| |||||| Sbjct 1751 TGCATGCCGGAGATGGTGCCGGCATCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAG 1692 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || | ||| || ||| | ||||| || | || ||| | || Sbjct 1691 GCGGGCACGGTGATGACGGCCGAGTTGATCGGGTGGCCGAGGTAGGCCTCAGCGGTCTCC 1632 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCG 7834 ||||| ||| | || |||||||| || ||||| || | | |||| || || || || Sbjct 1631 TTCATCTTGATGAGCACCATCGACGAGATCTCCTCGGGGGAGAACTCCTTGGTCTCGCCC 1572 Query 7835 TTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894 || | || || || | ||| || || | | ||| ||||| ||| ||| Sbjct 1571 TTGTACTCGACGGAGATGAAGGGCTTGTCGCCGGGCTTCTGGACGACCTTGAACGGCCAG 1512 Query 7895 TCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCA 7954 | ||||| ||| |||| || ||||||| || || | ||||| |||||||| ||| Sbjct 1511 TGCTTCATGTCGGCTTGCACGATGGGGTCCGAGAAGTTACGGCCGATCAGACGCTTGGCA 1452 Query 7955 TCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGA 8014 || || || ||||| | ||||||||||| |||||||| || || || ||||| ||| Sbjct 1451 TCGAACACGGTGTTGTGCGGGTTCATGGCGACCTGGTTCTTGGCGGCATCTCCGATGAGA 1392 Query 8015 CGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTC 8074 || || | || || || || |||||||| |||||| || || || || ||||| Sbjct 1391 CGCTC---GCTGTCGGTGAAGGCCACGTACGACGGGGTCACGCGGTTTCCCTGATCGTTG 1335 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAA 8134 || || || || ||||| ||||| ||||| |||||||||||||| || || || || | | Sbjct 1334 GCGATGATCTCAACGCGATCGTTCTGCCACACGCCGACGCACGAGTAGGTCGTGCCCAGA 1275 Query 8135 TCAATACCGA 8144 || ||||||| Sbjct 1274 TCGATACCGA 1265 >seq232 Length=13968 Score = 309 bits (342), Expect = 4e-79 Identities = 756/1138 (66%), Gaps = 12/1138 (1%) Strand=Plus/Minus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 ||||||||| || |||| || ||||| ||||| ||||| |||||||| || | || Sbjct 11227 GATGGCGGCCTGCACCGCGGCGCCGTAGGCGACGGCCTCGTCGGGGTTGATGGACTTGCA 11168 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 | || || ||||| || | | | | | || ||||| || || || || ||||| Sbjct 11167 GGGCTCCTTGCCGTTGAAGAACTGGGTGACGAGCTGCTGAATCTTGGGAATGCGGGTCGA 11108 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 || ||||||| || | || |||| || || ||||| | || || || Sbjct 11107 GCCGCCGACCAGCACCACCTCGCTCACGGCGCGCTTGTCCATCTTGGCATCGCGCAGCAC 11048 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || ||||| || ||||| ||||||| ||| || || ||||| || || || Sbjct 11047 CTTCTCGACGGGGTCCATGGTCGCGCGGAACATGTCGGCGCAGAGCTCCTCGAAGCGGGC 10988 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 ||||| || || || ||||| || ||||| ||||| | ||| || || || ||| | | Sbjct 10987 GCGGGTGATCGACGTGTAGAAGTCCACGCCCTCGTAGAGCGAGTCGATCTCGATGCTGGA 10928 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 || | | ||| || | | ||||| || || || || ||||| || | ||||||| Sbjct 10927 CTGGGTGGCCGACGACAGGGCGCGCTTGGCCCGTTCGCAGGCCGTACGCAGTCGACGAAC 10868 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 ||| |||| ||| || || || || || || || || || ||||| | |||||| Sbjct 10867 GGCGCGCGCGTTGCCCGAGATGTCCTTGCCGTGCTTGCGCTTGAACTCCTGGACGAAGTG 10808 Query 7441 -TCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497 | || | | | | || || || || || || | ||| || || |||||||| || Sbjct 10807 GTTGACCATGCGGTTG---TCAAAGTCCTCGCCGCCGAGGTGGGTGTCGCCCGCGGTGGC 10751 Query 7498 TTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACC 7557 ||||| || || | || | || ||| | | | ||| || || || || || || || Sbjct 10750 CTTGACCTCGAACACGCCCTCCTCGATGGTCAGGAGCGAGACGTCGAAGGTGCCGCCGCC 10691 Query 7558 CAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGAT 7617 |||||| || ||||| |||||| | ||| || || || ||||| ||||| ||||| Sbjct 10690 CAGGTCGAAGATGAGCACGTTCATCTCGCCGCGGGCCTTTTTGTCGAGGCCGTAGGCGAT 10631 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCG 7676 || || || || || || || || || || ||| | || ||| | || || | | Sbjct 10630 GGCGGCGGCGGTGGGCTCGTTGATGATGCGCTTGACC-TGCATGCCGGAGATGGTGCCGG 10572 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 | || || || || || || ||||| ||||| |||||||||||||| || | ||| ||| Sbjct 10571 CGTCCTTGGTGGCCTGGCGCTGCGAGTCGTTGAAGTAGGCCGGGACGGTGATGACGGCGG 10512 Query 7737 CCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCG 7796 ||||| | || || || | || || | || ||||| ||| || ||||||| Sbjct 10511 TGGTGACGGGGTGGCCCAGGTAGGCCTCGGCCGTCTCCTTCATCTTGACGAGCACCATCG 10452 Query 7797 ATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGG 7856 | || ||||| || | || |||| || || || || | || || || | || Sbjct 10451 ACGAGATCTCCTCGGGCGAGAACTCCTTGCGCTCGCCCTTGTACTCGACGGAGATGAAGG 10392 Query 7857 GTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCT 7916 | || || | | ||| ||||| ||| ||| | ||||| ||| | ||||| Sbjct 10391 GCTTGTCGCCGGGCTTCTGGACCACCTTGAACGGCCAGTGCTTCATGTCGGCCTGGACGA 10332 Query 7917 GTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGT 7976 ||||||| | || | ||||| || ||||| || || || || ||||| | |||| Sbjct 10331 CCGGGTCCGAGTAGTTGCGGCCGATCAGGCGCTTGGCGTCGAACACGGTGTTGTGCGGGT 10272 Query 7977 TCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACG 8036 ||||||| |||||||| |||||||| ||||| || || || | || || || | Sbjct 10271 TCATGGCGACCTGGTTCTTGGCCGCGTCGCCGATCAGGCGCTC---GGTGTCGGTGAAGG 10215 Query 8037 CGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGT 8096 | ||||| || |||||| || || || |||||||| || || || || || || |||| Sbjct 10214 CCACGTAGGACGGGGTCACCCGGTTGCCCTGGTCGTTGGCGATGATCTCCACCCGATCGT 10155 Query 8097 TTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGT 8154 | ||||| ||||| |||||||| || || || || | || || || | |||||| || Sbjct 10154 TCTGCCACACGCCCACGCACGAGTAGGTCGTGCCCAGGTCGATGCC-AATGCTTGTGT 10098 >seq2360 Length=5037 Score = 199 bits (220), Expect = 5e-46 Identities = 418/614 (68%), Gaps = 13/614 (2%) Strand=Plus/Plus Query 7534 CGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTT 7593 ||| ||||| || ||||| ||||||| ||| || | ||| | |||| | || | | | Sbjct 3424 CGACACATCGAAGGTACCGCCACCCAAGTCGAACACGAGAATGTTCTTCTCACCCT---T 3480 Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGAC 7652 | || | ||||||||||||||| || || || || || || || || || || | ||| Sbjct 3481 GACCTCGTTGAGACCGTACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGTACGAC 3540 Query 7653 AGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 ||| || || || || | ||||| || || || || || || | ||||| |||| Sbjct 3541 -GTTGAGACCGGCGATGACACCGGCATCCTTAGTGGCCTGACGCTGGGCGTCGTTGAAGT 3599 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 |||||||||| || ||||| |||| | |||| |||| || || || | || ||||| | Sbjct 3600 AGGCCGGGACGGTGACGACGGCGTTCTTGACGGTCTTGCCAAGGTAGGCCTCGGCGATCT 3659 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCAC 7832 | ||||| |||||||| ||||| | |||||||| || | || |||| || | || Sbjct 3660 CCTTCATCTTGGTAAGGACCATGGCGGAAATCTCCTCGGGGGCGAACTCCTTGGCCTCGT 3719 Query 7833 CGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACC 7892 || | || || | || ||| ||| ||| | ||| | ||| |||| | Sbjct 3720 TCTTGTACTCGACGCCGATGTAGGGCTTA-CCG--TTCTTGTTGATGATCTTGTACGGCA 3776 Query 7893 AATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTG 7952 || |||| | ||||||| | ||| | || || | ||||| |||||||| Sbjct 3777 GGAGCTTGGCATCGGCCTGGACCTCCTTGTCGGCGAAGTTGCGACCGATCAGACGCTTGA 3836 Query 7953 CATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAA 8012 | || || || ||||| | ||||| | || | || ||||| || ||||| ||||| | Sbjct 3837 CGTCGAAGACAGTGTTCTCCGGGTTGAGCGCGGCCTGATTCTTGGCGGCGTCACCGATGA 3896 Query 8013 GACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGT 8072 | || || | | |||| ||||| ||||| || || || |||| || || ||||||| Sbjct 3897 GGCGCTC---ACTGTCCGAGAACGCCACGTAGGACGGAGTGATTCGGTTACCCTGGTCGT 3953 Query 8073 TCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC-GAATACGTTGTTCCT 8131 | || || || || || ||| |||| | ||||| ||| || ||| || || || || || Sbjct 3954 TGGCGATGATGTCCACTCGGCCGTTCTTCCAGATGCCCAC-CACGGAGTAGGTCGTGCCG 4012 Query 8132 AAATCAATACCGAT 8145 | ||| |||||||| Sbjct 4013 AGATCGATACCGAT 4026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634989117082320