Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq378 136 5e-27 seq4651 104 3e-17 >seq378 Length=11515 Score = 136 bits (150), Expect = 5e-27 Identities = 647/1013 (64%), Gaps = 30/1013 (3%) Strand=Plus/Plus Query 111987 CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 112046 |||||||| || |||| |||| || ||||| ||||||||||| ||| | || ||||| Sbjct 4369 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 4428 Query 112047 GAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 112106 || || ||||| || | |||||| || |||||||||||||| || || Sbjct 4429 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 4488 Query 112107 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 112166 |||||||| || || ||||||||| | || ||| | | ||| | ||||| |||||||| Sbjct 4489 TGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTGC 4548 Query 112167 CCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226 || || |||| ||||| || | ||| | ||| ||||||| || | ||| Sbjct 4549 CCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAG 4608 Query 112227 AAGTACGAGGAAGAAAGTCGGGCG-ACTGCGACGGTGCCAGCTGCC---GATGTGTGGAA 112282 |||||| | || | || ||| | ||| ||| | || ||| || ||||| Sbjct 4609 CGCTACGAGCAGGAGGGCCGCGCGCGCCGCG-TGGT-CAAG--GCCCAGGAGCTGTGGTT 4664 Query 112283 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTG 112342 || || ||| |||| || | |||||| || || || || ||||| ||||| |||||||| Sbjct 4665 CGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTG 4724 Query 112343 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGA 112402 ||| ||| || || || | | || || || || ||||| || || || Sbjct 4725 CAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATTCAGTCGTCGAACCTGTGCACGGA 4784 Query 112403 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 112462 || | | | || || ||| ||| || || ||||| || || |||| || Sbjct 4785 GGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTCTGCAACCTGGCCTCGCTCGCGCT 4844 Query 112463 CCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 112522 ||||||| | ||| | | | ||||| | | || || ||||| || Sbjct 4845 GCCCAAGTTCAT--CACCAACGGCGA----GTTTGACCACCAGAAGCTGCACGACGTCGT 4898 Query 112523 GAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGA 112579 ||| ||||| || ||||| |||| || || || | || | |||||||| || Sbjct 4899 GAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA 4958 Query 112580 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGC 112639 | || || || || || ||| | ||| | || || || |||| || || || || || Sbjct 4959 G---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGC 5015 Query 112640 GGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA-TG 112698 || || ||||| | |||||| | | || |||||| || || |||| | Sbjct 5016 CGACGTCTTCATGATCATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCG 5075 Query 112699 CGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCAG 112755 ||| || || ||||| || || ||||||| || | || ||| ||| | || Sbjct 5076 CGC-CATCTTCGAGACCATCTACTACGCCGCCCTGGTCGC---CTCGAACGAGCTCGCGC 5131 Query 112756 AGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAA 112814 |||| || || | || | |||| ||||| || || || || |||||| ||| || Sbjct 5132 AGGTCGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTC-CAAGGGCAAGCTCCAG 5190 Query 112815 TTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGC 112874 || | |||| | | | | | | ||||||| | | ||| | | Sbjct 5191 CCCGACCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAAC 5250 Query 112875 ATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACC 112934 ||| || | ||||| || ||| || | |||| || ||||| || ||||| ||| Sbjct 5251 ATCGCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACC 5310 Query 112935 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 | || ||| |||| || || || |||||||| ||||||||||| |||||||| Sbjct 5311 TCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTA 5363 >seq4651 Length=3183 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 102122 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTT 102176 |||| ||||| || || ||||| ||||||||| | | | || |||| |||| Sbjct 1381 TCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTC 1439 Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236 || ||||| ||| ||| ||| || || ||||| ||||||||||| || ||||||| Sbjct 1440 GCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC 1499 Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296 | || | |||||||||||||| || |||||||| || ||| |||| |||||| | Sbjct 1500 TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATG 1559 Query 102297 ATCTCTCGTGACGAGGGACTCCAC 102320 ||| || || ||||| |||||| Sbjct 1560 ATCAGCCGCGATGAGGGCCTCCAC 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620601972550560