Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq378 138 1e-27 seq4651 87.8 2e-12 >seq378 Length=11515 Score = 138 bits (152), Expect = 1e-27 Identities = 323/485 (67%), Gaps = 2/485 (0%) Strand=Plus/Minus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || || |||| || |||| ||||| || ||| ||| || ||||||| Sbjct 4852 ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCAGACGGCCACCTCGTCGGGCGACGTGTACT 4793 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 106571 | | || || |||| ||| || || ||| || || | | || ||||| || Sbjct 4792 GGACGACCTCCGTGCACAGGTTCGACGACTGAATGGTGCCGAGGTGCTGCTGGTTGGACT 4733 Query 106572 TTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGA 106631 | |||||| || |||||||| |||||||||||||| || ||||| |||| |||| || Sbjct 4732 TGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGA 4673 Query 106632 GAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGT 106691 | || || ||||| || ||| || | | | || || |||||| ||||| Sbjct 4672 GGATGGCGAACCACAGCTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTGCTCGT 4613 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 106751 | ||| | || ||||||| ||| || |||| | || || || |||| || Sbjct 4612 AGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGT 4553 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 || || || || ||||| | || ||| ||| || ||||||||||| ||||| |||| Sbjct 4552 TGGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAA 4493 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT- 106870 |||||||| | |||||||| | || ||| || | || ||||| || | Sbjct 4492 TCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTT-CTTCTTC 4434 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | || ||||| || | ||| ||||||||||| ||||| || |||| |||| || ||| Sbjct 4433 AGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCC 4374 Query 106931 TTTCG 106935 || || Sbjct 4373 TTGCG 4369 Score = 114 bits (126), Expect = 2e-20 Identities = 216/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || || || || ||| |||| ||||| | || |||| | | || || | ||||| || Sbjct 4137 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCC 4078 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 4077 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGAGTG 4018 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 4017 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 3958 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | || | |||| ||| ||| | |||||||||||| ||||| | |||| Sbjct 3957 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGATGGCCACGCGCATGAGCATG 3898 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGG 107360 | ||||| || | || |||| |||| || |||||| ||| ||| |||| Sbjct 3897 TGCTGGGGACGCTCGACGATCTTGCCGTCGACCC--TGAAGAGGTAGGAGCGCTCGAGGG 3840 Query 107361 TTTTGAGACCAAAGTA 107376 | |||| |||||||| Sbjct 3839 TCTTGAAGCCAAAGTA 3824 >seq4651 Length=3183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 261/393 (66%), Gaps = 11/393 (3%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||| || || | || |||| ||||||| | |||| || | |||||| ||||| Sbjct 1772 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 1713 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 ||| ||||| | || | ||| | ||||||||||| || ||||| | Sbjct 1712 GAGGGCCACGGGGAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACAGCCTCGAGGAT 1653 Query 117216 GATG-GCGTGGATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCA 117271 ||| || ||| | | |||| | ||| | || ||| || || | || ||| || Sbjct 1652 GATCTGCTTGGGCACGT-CGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG--CA 1596 Query 117272 CGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGC 117331 ||| || || |||||| |||||||| ||| || | || || |||| |||| Sbjct 1595 -GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGC 1537 Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 | |||||||| || |||||||| | ||| | || | |||||| ||||||||||||| Sbjct 1536 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGA 1477 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGA--GACTTTGTGT 117448 | ||||| || || || | | || ||||||||||||| ||| || ||| Sbjct 1476 TGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT 1417 Query 117449 CAAACCATTTCATTGCCCATTTCGCCTTCTTCT 117481 | ||| ||||| ||||| | |||||||||| Sbjct 1416 TGATCCACTTCATCGCCCAGTCGGCCTTCTTCT 1384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589847331593520