Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq378 361 1e-94 seq4651 260 3e-64 >seq378 Length=11515 Score = 361 bits (400), Expect = 1e-94 Identities = 929/1394 (67%), Gaps = 77/1394 (6%) Strand=Plus/Minus Query 212585 GGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGC 212644 |||||| || ||||||||||||||||| |||||||||| |||| ||| | |||||| | Sbjct 5712 GGTGCGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGA 5653 Query 212645 TGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGG 212702 ||||| || || | | || |||| |||| ||||| ||| || Sbjct 5652 GGTGAGCTTG----GCAAACGAG---GG-----CTCG---CCCA--TGTAGACGTTGAGC 5610 Query 212703 GACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGG 212762 ||||| |||||||| ||| | | | | || ||||||||||| ||||| | | ||| Sbjct 5609 GACTGGCTCTGGTCGATGTAGGCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGC 5550 Query 212763 GAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTC 212822 | ||||||||||||||||||| | | | |||| ||| || |||| | |||| | Sbjct 5549 GGGAGCTCCCACACGGTCTTGTACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGC 5490 Query 212823 TGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTC---CAGAGGCCC 212879 || || || || |||| | |||| | | || | || | |||||||| Sbjct 5489 TGGACCGAGCCGTTGTGCGAGACGAGCTT---GTTCTTGAGCGCGGGCGACCAGAGGCCG 5433 Query 212880 CTGGTCTCCAGGCACTTGACCAG---GTGAGGGTTGACTATCTGGAAGTCACCTGAGAGC 212936 | || | || || | ||| ||| |||||| | |||||| || | ||| Sbjct 5432 CG---CTGCTGGAGCTCGCGCAGAAGGTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGG 5376 Query 212937 ACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATC 212996 | | | ||| | ||| | ||||||||||| | || ||||||||| ||||| ||| Sbjct 5375 ATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATC 5316 Query 212997 TGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCG 213056 || | || ||| ||||||||||| ||||| ||||| ||| | || ||||||| | Sbjct 5315 TGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGG 5256 Query 213057 CCGATGA-GGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCAC 213115 ||||| ||||| || || ||||||||||| ||| | ||| | | || || Sbjct 5255 GCGATGTTGGCGCGGA-GCGTGGCCCAGTCCCACCTGTCCGACGG---CACG------AC 5206 Query 213116 GTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTA 213175 | ||| | ||| ||| | |||| ||| | |||| ||||| ||| | ||| Sbjct 5205 GCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCGGGCGAGCCCTCGTAGGTCTGGTA 5146 Query 213176 GGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTC 213235 || ||| | ||| || |||||| || || |||||| |||||||||||||| || Sbjct 5145 GGTGCCCTCGACCTGCGCGAGCTCGTTCGAGGCGACCAGGGCGGCGTAGTAGATGGTCTC 5086 Query 213236 AAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGG------ACGTGAAGGGCATCATCAT 213289 || || | | |||||||| |||||| | ||| | | |||| ||||| Sbjct 5085 GAAGATGGCGCGGTTGAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCATGATCAT 5026 Query 213290 GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 | || || || ||||| ||||| || |||||||||||||| ||||| | || ||| Sbjct 5025 G------AAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTT 4972 Query 213350 AGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCG 213409 || ||| | ||| || |||||| ||||| |||||| | |||||||||||| Sbjct 4971 CGAGTTGCGGGCCTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTT 4912 Query 213410 GGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTG 213469 |||| |||| || ||| | | ||| | || ||| | ||| || |||| Sbjct 4911 GGTGACCACCTTCACGACGTCGTGCAGCTTCTGGTGGTCAAACTCG------CCGTTGGT 4858 Query 213470 CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTG 213528 | |||| ||||| |||| |||||||||||| ||||||||||| | | | | | | Sbjct 4857 GATGAACTTGGGCAGCGCGAGCGAGGCCAGGTTGCAGACGGCCACCTCGTCGGGCGAC-G 4799 Query 213529 TGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGT 213588 |||||| | || ||| ||||||||||| | | |||||||| |||| ||| |||| Sbjct 4798 TGTACTGGACGACCTCCGTGCACAGGTTCGACGACTGAATGGTGCCGAGGTGCTGCTGGT 4739 Query 213589 TTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGG 213648 | ||||| ||||| | |||||||| ||||||||||| | |||||||| | ||| | Sbjct 4738 TGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCG 4679 Query 213649 ACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC-CGGGC 213707 || | || || | ||| || | | |||||||||||| || | || | ||| | Sbjct 4678 ACTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGACCACGCGGC-----GCGCGCGGCC 4624 Query 213708 GT-AGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCA-GACCCTGTCCAGTC 213765 | |||||| | ||||| ||| | ||| || | |||||| || | | ||| | Sbjct 4623 CTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTC-GAACAGGC 4565 Query 213766 C--CGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCA 213822 | || | | | ||| || | ||| |||||| ||| | |||| || | || || Sbjct 4564 CGGGGGCCTCGTT--GGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTC-CACGCGCTTCA 4508 Query 213823 TGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTC 213882 |||||||||| || | |||||| || ||| || || | || | |||| ||| | Sbjct 4507 TGAACAGGTCGGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGC 4448 Query 213883 CAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGA 213942 | ||| || ||| || || ||||||||||||||||||||||| ||||| | ||||| Sbjct 4447 CGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGA 4388 Query 213943 TGGCAAAGGCGCCC 213956 |||| || || ||| Sbjct 4387 TGGCGAAAGCACCC 4374 Score = 138 bits (152), Expect = 2e-27 Identities = 284/417 (68%), Gaps = 4/417 (1%) Strand=Plus/Minus Query 213995 GTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATA 214054 |||| ||| ||| || | ||| | || |||||||| |||||||| || || || Sbjct 4231 GTTGTAGACGCGGAGCATGGGGATGAGACCGTTGGAGGTGCCGTTGGTGCCGCGGATGTA 4172 Query 214055 CGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGAT 214114 |||| |||||| | | | | | || ||| || ||||| ||||| |||||||||| Sbjct 4171 CGAGTTGGAGGCGCGGATGCGGTGCGCGGCGAGGCCGATGCCGCCGGCCGACTTGGAGAT 4112 Query 214115 CATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAG 214174 | |||||| || | | || || |||||| | || ||| || | | | | || Sbjct 4111 GAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCCTCGATCGAGTCCTCCTTCATGGTGAG 4052 Query 214175 CAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGC 214234 || |||||| ||| ||||| || | | | ||| | |||||| ||||| ||| |||| Sbjct 4051 CAGGAAGCACGACGACAGCTGCGGACGCGGAGTGCCGGCGTTGAAGAGCGTCGGGGTGGC 3992 Query 214235 ATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTG 214294 ||| | | | || | || | ||| ||||||||| | || | |||||||| || Sbjct 3991 GTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAGGTCTCGATCACGGCGGGGATGTTGTC 3932 Query 214295 CTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTT 214353 |||||| | | || ||| | ||| |||||||||||||| | ||| | | || | Sbjct 3931 CTTGTGCAGGCCGATGGC-CACGCGCATGAGCATGTGCTGGGGACGCTCGACGA-TCTTG 3874 Query 214354 TGGG-GCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAG 214409 | | || ||| |||||||||||||| || |||||||| |||||||||| |||| Sbjct 3873 CCGTCGACCCTGAAGAGGTAGGAGCGCTCGAGGGTCTTGAAGCCAAAGTAGGTGTAG 3817 >seq4651 Length=3183 Score = 260 bits (288), Expect = 3e-64 Identities = 570/842 (68%), Gaps = 34/842 (4%) Strand=Plus/Minus Query 47861 TCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGGT 47920 || |||||||| ||||| ||||| | |||||| |||||| | |||| ||||||| Sbjct 1864 TCGAAGAAGTTGGTCTTGCCCTCGAGGGAGATGAGCTCCATCCACGGGAACGGGTTGGTC 1805 Query 47921 GTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGAT 47979 ||| || | |||| ||| | | || ||| | || |||||| ||||||| Sbjct 1804 TGGTTGTAGTGCT-TGTCGCAGCCGAGGGCGGCGAGGAGGCGGTCGGCGACGAACTCGAT 1746 Query 47980 GTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAG 48039 ||| | |||||||| | ||||||||| ||||||| |||||| | | || || | Sbjct 1745 GTACTGGCACATGAGGTCGGCGTTCATGCCGATGAGGGCCACGGGGAGCGACTCGGTCAC 1686 Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTA---ACGCGGGACTCTGA 48096 || |||||||| |||| || || || | |||||||| ||| || | || Sbjct 1685 GAATTCCTTCTCAATCTCGACAGCCTCGAGGATGATCTGCTTGGGCACGTCGGTC---GA 1629 Query 48097 GGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTC 48156 ||| |||||| | | || ||| ||||| | |||||| ||||| | ||| | ||| || Sbjct 1628 GGGCTTGTTG---ACGAGCATGGTGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTC 1572 Query 48157 GTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAG 48216 || |||||||| | | |||| |||| ||| || ||||||| || | || ||||| Sbjct 1571 ATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAG 1512 Query 48217 CCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGT 48276 |||||| || | ||| ||| ||||||||||||||||| || || ||||| || Sbjct 1511 CCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAATCCGAC 1452 Query 48277 GAGCCTCTCTCCGAA-----AGAAG-CGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTC 48330 ||| | ||| |||| || | | | ||||| |||||| | ||||||||| Sbjct 1451 GAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTC 1395 Query 48331 TGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA---GCTTCTTGCACTC 48387 ||||||||||||| | |||| ||||| ||||| ||||||| | | ||| ||| Sbjct 1394 GGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTT---CTC 1338 Query 48388 ACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATT 48444 | | |||| || ||||| |||| ||| | ||||||||| ||||| | || Sbjct 1337 GACGGAGTCCTTGACGTAGGTGTCGATGAGGAGC---GAGTACATCTCGGAGTGGATGTT 1281 Query 48445 CTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGA 48504 ||| || ||||| || || ||||||||| | ||||| ||||||||| || | Sbjct 1280 CTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCAT 1221 Query 48505 GAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGA 48563 ||| | || || |||||||| || || || || ||| || |||||||| | || Sbjct 1220 GAAGC-GGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGA 1162 Query 48564 CATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGC 48623 | || || | ||| || | ||||| || | |||| | | |||| || | ||| || Sbjct 1161 CGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCAGTGCTTCATGTCGGAGC 1102 Query 48624 CCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATA 48683 ||| || ||||| || | ||||||||||| || || || |||||||| |||| | Sbjct 1101 TCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGA 1042 Query 48684 TG 48685 || Sbjct 1041 TG 1040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931322063992320