Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4651 217 3e-51 seq378 168 1e-36 >seq4651 Length=3183 Score = 217 bits (240), Expect = 3e-51 Identities = 454/661 (69%), Gaps = 34/661 (5%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||| ||||| || | |||||| Sbjct 1041 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCCGAGGAAGTCGATCTG 1100 Query 25537 GCCAAGGACATGGACGGCTGGTA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | |||||| | |||| | ||||| | ||| |||||| ||| || ||||| Sbjct 1101 AGCTCCGACATGAAGCACTGGGAATCGCTCAA--CAACGACGAGAGGCACTTCATCAAGC 1158 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| ||||| ||||| || || || || || ||| ||||||||| || | | Sbjct 1159 ACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTCGCCGGCCGCT 1218 Query 25655 TCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 ||| | ||| |||||| ||| ||||| || |||||||| || || || |||| Sbjct 1219 TCATGAAGGAGGTGCAG---GTGCCCGAGGCGCGCTGCTTCTACGGCTTTCAAATCGCCA 1275 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACG 25768 |||| || | ||||| ||| |||| | ||| || || || ||| | | ||| Sbjct 1276 TCGAGAACATCCACTCCGAGATGTA---CTCGCTCCTCATCGACACCTACGTCAAGGACT 1332 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 || ||||| || || || || | ||||||||| | | ||| |||||| ||||| Sbjct 1333 CCGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTCAAGAAGAAGG 1392 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG---CGCTACGTTTGGCGAGCGGCTGG 25885 | ||||| |||||||||||||||| || | || || || | |||||| || | Sbjct 1393 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCGAGCGTCTCG 1452 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGG 25944 | | || || || || ||||||||||| ||| ||| | | ||| ||||||||||| Sbjct 1453 TCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCCATCTTCTGG 1511 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || ||||||||| || ||| |||||| | |||||| | || Sbjct 1512 CTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCAGCCGCGAT 1571 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA--CTTGCTCCACAAAC 26062 ||||| |||||| | || || |||||||| ||||||| ||| || | || |||| | Sbjct 1572 GAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACA----CCATGCTCG-TCAACAAGC 1626 Query 26063 CTTCTCAAGAGAC-CGTCTA--CAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGT 26119 | ||| | ||| | | | ||| |||||| |||||||| ||||| |||||||| | Sbjct 1627 C--CTCGACCGACGTGCCCAAGCAG-ATCATCCTCGAGGCTGTCGAGATTGAGAAGGAAT 1683 Query 26120 T 26120 | Sbjct 1684 T 1684 >seq378 Length=11515 Score = 168 bits (186), Expect = 1e-36 Identities = 450/678 (66%), Gaps = 35/678 (5%) Strand=Plus/Minus Query 221504 AAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAA--G 221561 |||||||||||||| ||||| |||||||| |||||||||||||| | | |||| || | Sbjct 5024 AAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGAGTTG 4965 Query 221562 CGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGA 221621 ||| || || |||||||| || |||||| |||||||| |||||||||||| |||| Sbjct 4964 CGG--GCCTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTTGGTGA 4907 Query 221622 TGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGA 221681 || || || || ||| |||||||||||| | | ||||||||| | ||| Sbjct 4906 CCACCTTCACGACGTCGTGCAGCTTCTGGTGGT------CAAACTCGCCG--TTGGTGAT 4855 Query 221682 GGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCT 221741 | || | |||| | || | ||||||||| || |||||||||||||| Sbjct 4854 GAACTTGGGC---AGCG---CGAGCGA----GGCCAGGTTGCAGACGGCCACCTCGTCGG 4805 Query 221742 TGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGAT 221801 || ||||| | || ||| || || ||||| ||| ||||| || ||||| | Sbjct 4804 GCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACGACTGAATGGTGCCGAGGTGCT 4745 Query 221802 TGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCA 221861 || || ||||||| ||| ||||||||||| ||||| |||| ||| ||||| | Sbjct 4744 GCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGA 4685 Query 221862 GCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC 221921 ||| | | | || || | ||| || || |||| || | || | | || | Sbjct 4684 TCTGCGACTCGAGGATGGCGAACCACAGCTC-CTGGGCCT---TGACCAC---GCGGCGC 4632 Query 221922 CCTCGG----TCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCG 221977 | ||| || || || | || | || |||| | || ||| ||| Sbjct 4631 GCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCG 4572 Query 221978 TCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT-GCTTGTTGTCTTTGACCCT 222036 |||||| || | | ||| || | || ||||| || ||| | || | Sbjct 4571 AACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCGTC-TCCACGCG 4513 Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || |||||| ||||| || |||||||| | | |||||||| | || || | |||||| Sbjct 4512 CTTCATGAACAGGTCGGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTC 4453 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | ||||| ||| ||| |||| || | || ||||| ||||| |||||||| ||||| || Sbjct 4452 CTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAG 4393 Query 222157 ATAGACGGCCAGAGCGCC 222174 |||| ||| | ||| || Sbjct 4392 GTAGATGGCGAAAGCACC 4375 Score = 109 bits (120), Expect = 1e-18 Identities = 229/334 (69%), Gaps = 8/334 (2%) Strand=Plus/Minus Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 |||||| || ||||| || ||||| | |||||| |||||| ||||| |||||| Sbjct 4138 GCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCC 4079 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 ||| || ||||||||||| | | | ||||| || || ||||||| ||| | | | Sbjct 4078 CTCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGAGT 4019 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGACATCAGATCGT 222488 | |||||| || ||||| || ||||||| || ||| ||| || |||| || |||| Sbjct 4018 GCCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAG-AGCTGCTGCGACAAGAGGTCGT 3960 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | ||||| | || || |||||||||| ||| | ||||| | |||| || Sbjct 3959 AGGTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGATGGCCACGCGCATGAGCA 3900 Query 222549 TGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 ||| |||||| | ||| || | | || | || | || || ||||| || || | Sbjct 3899 TGTGCTGGGGACGCTCGAC-GATCTTGCCGTCGACCCTGA-AG-AGGTAGGAGCGCTCGA 3843 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 | |||||||| ||||||||| || || ||||| Sbjct 3842 GGGTCTTGAAGCCAAAGTAGGTGTAGTTGAAGTC 3809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928634672085120