Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq8422 100 2e-15 seq6806 93.3 3e-13 seq14000 89.7 3e-12 seq1473 89.7 3e-12 seq7456 86.0 4e-11 >seq8422 Length=1807 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || |||||| | || || ||||||||| | ||||| ||||||||||| ||| Sbjct 761 AAGATGGCGTACCAAGCAGCCAAGGGCATGCATTTCCTGCACTCCTCCGGCATTGTGCAT 702 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGT 878238 | ||||||||||| || ||||| | || ||||| || ||||| || || || Sbjct 701 CGCGATCTCAAGTCGCTCAATCTGTTGCTCGATTCCAAGTGGAACGTCAAGGT 649 >seq6806 Length=2266 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || || ||||| || || || | || || || || ||||| Sbjct 2236 ACGAAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGT 2177 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || || || ||||| ||||| || || ||||| || ||||||||||| || || Sbjct 2176 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCC 2117 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| || ||||| || || || || || ||||| || || || Sbjct 2116 CTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTATCGCTGGACTCGACCTCGAG 2057 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || |||||||| ||||| ||||| || || Sbjct 2056 GGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTG 2018 >seq14000 Length=956 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || || || || || || ||||| ||| | ||||| || ||||| || || Sbjct 40 AAGATGGCCTACCAGGCCTCCAAGGGCATGCACTTCCTCCACTCGTCGGGCATCGTGCAC 99 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 || ||||||||||| || || || || || || | || ||||| || || ||||| || Sbjct 100 AGGGATCTCAAGTCACTCAACCTGCTGCTCGACGCCAAGTGGAACGTCAAGGTGAGCGAC 159 Query 878246 TTTGGTTTGACAAAGTT 878262 ||||| | || ||||| Sbjct 160 TTTGGCCTCACCAAGTT 176 >seq1473 Length=6523 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| | || |||||||| || || || ||||| ||||| || || |||||||| |||||| Sbjct 385 AAGGTCGCCTATCAAGCCTCCAAGGGCATGCACTTCTTGCATTCCTCCGGCATCGTCCAT 326 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || || || || || || || || ||||| || || ||| || Sbjct 325 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGTGCGT 269 >seq7456 Length=2066 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || || || | || || ||||| ||| | ||||| || ||||| || || Sbjct 732 AAGATGGCCTACCAGGCGGCCAAGGGCATGCACTTCCTCCACTCGTCGGGCATCGTGCAC 791 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | ||||||||||| || || || || || || || || ||||| || || ||||| || Sbjct 792 CGCGATCTCAAGTCCCTCAACCTGCTGCTCGACTCCAAGTGGAACGTCAAGGTGAGCGAC 851 Query 878246 TTTGGTTTGACAAAGTT 878262 || || |||| ||||| Sbjct 852 TTCGGGCTGACCAAGTT 868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267402888968504