Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq416 93.3 1e-14 >seq416 Length=11065 Score = 93.3 bits (102), Expect = 1e-14 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 2407 TGGTCGTAGTAATACTTGGGCGACTTGGACAGCAGGAAGATGTACTCGTGCGCCTTTGTG 2466 |||||||||| || ||| || || || | ||||||| ||||||||| | ||| Sbjct 9404 TGGTCGTAGTGGTAGGTGGCGGATTTAGAAAAGAGGAAGACGTACTCGTGGGAGCGCGTG 9345 Query 2467 CAGCGGTCGCGCACGCTCTCCGGCATTGG--GTTTGGCTTGTGCCAGATAATATCCTGAC 2524 ||||| ||| || ||| ||| ||| |||||||||||||| || || | Sbjct 9344 GGCCGGTCTTTGACGGATTCTGGC--TGGCAGTTGGGCTTGTGCCAGATGATGTCGGACC 9287 Query 2525 GCAGGTACCAGCCGTCGGCTTGCAGGGCGAACGCTACGCGCCAGGGGATGCCGATAAGGT 2584 |||||||||| ||||||||||| |||||||| || || | ||| || | || || |||| Sbjct 9286 GCAGGTACCACCCGTCGGCTTGAAGGGCGAAGGCCACCCTCCACGGCAGACCTATGAGGT 9227 Query 2585 CTTTTGCTTTCAATCCGTTAGG 2606 |||| | || || || || || Sbjct 9226 CTTTGGGCTTTAAGCCATTTGG 9205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130074439205332