Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq378 109 7e-19 seq4651 87.8 2e-12 >seq378 Length=11515 Score = 109 bits (120), Expect = 7e-19 Identities = 215/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| ||||| ||| ||| |||||| || |||| |||| || Sbjct 3824 TACTTTGGCTTCAAGACCCTCGAGCGCTCCTACCTCTTCA--GGGTCGACGGCAAGATCG 3881 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 | || || ||| ||||| ||||||| || || |||||| | ||| ||| |||| Sbjct 3882 TCGAGCGTCCCCAGCACATGCTCATGCGCGTGGCCATCGGCCTGCACAAGGACAACATCC 3941 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | || | ||||| |||||| |||| || | |||| ||||| || || | Sbjct 3942 CCGCCGTGATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGA 4001 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | |||||||| || || || || | |||||| |||| |||||||| || ||| | Sbjct 4002 CGCTCTTCAACGCCGGCACTCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGA 4061 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||||| ||| | || ||||| | || || | | |||| || | ||||| |||| Sbjct 4062 AGGAGGACTCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGT 4121 Query 75444 GGGCTGGGGGTATTGG 75459 ||| || || || || Sbjct 4122 CGGCCGGCGGCATCGG 4137 Score = 105 bits (116), Expect = 8e-18 Identities = 850/1358 (63%), Gaps = 30/1358 (2%) Strand=Plus/Plus Query 75587 CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTT 75646 |||||||| | |||| ||||| | || || ||||| || || ||| | || ||||| Sbjct 4369 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 4428 Query 75647 GAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCT 75705 || | | || ||||| || | || ||| || | |||||||| | ||| Sbjct 4429 GACCTGAAGAAG-AACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCT 4487 Query 75706 GTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTG 75765 ||||||||| ||||| ||||||||||| || ||| ||| || | ||||| || || || Sbjct 4488 GTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTG 4547 Query 75766 TCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACAC 75825 || || |||| || || || | |||| || ||| ||||||| || | ||| Sbjct 4548 CCCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGA 4607 Query 75826 AAAGTATGAAGAGGAGGGTAGAGC-CAATGCGACTGTACCA-GCCGCCGATGTTTGGAAG 75883 || || ||||||| | || | ||| || | | ||| || | ||| Sbjct 4608 GCGCTACGAGCAGGAGGGCCGCGCGCGCCGCG--TGGTCAAGGCCCAGGAGCTGTGGTTC 4665 Query 75884 GCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGT 75943 || || ||| | || |||| ||||| || || || || ||||| |||||||| || || Sbjct 4666 GCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTGC 4725 Query 75944 AACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAA 76003 ||| ||| ||||| || | | || || || || || || || |||||||| Sbjct 4726 AACGGCAAGTCCAACCAGCAGCACCTCGGCACCATTCAGTCGTCGAACCTGTGCACGGAG 4785 Query 76004 ATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTT 76063 | | ||||||| || ||| ||| || ||||| |||| || |||| || Sbjct 4786 GTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTCTGCAACCTGGCCTCGCTCGCGCTG 4845 Query 76064 CCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACA 76123 || |||| || || | | || || ||||| | | || || || || || Sbjct 4846 CCCAAGT---TC-ATCACCA-AC-GGCGAGTTTGACCACCAGAAGCTGCACGACGTCGTG 4899 Query 76124 AAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAG 76180 ||| | || ||||| || || ||| || || |||| || | || ||||| ||| Sbjct 4900 AAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGAG 4959 Query 76181 ACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCG 76240 || || || || || ||||| ||||| || || || | || || || || || || Sbjct 4960 ---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGCC 5016 Query 76241 GATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAA-TGC 76299 || || || || | ||| || | | || || || ||| ||| | || || Sbjct 5017 GACGTCTTCATGATCATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCGC 5076 Query 76300 TCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGC 76359 | ||||| || ||||| || |||| |||||| || || | || | | Sbjct 5077 GC-CATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGGT 5135 Query 76360 CCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGA 76419 | | || |||| |||| | ||||| || ||||||||| | || ||| ||| || Sbjct 5136 CGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTCCAAGGGCAAGCTCCAGCCCGA 5195 Query 76420 TATGTGGGAAGGTGAAACCAAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAA 76479 | |||| | | | | || | ||||||| ||| | |||| Sbjct 5196 CCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATCGC 5255 Query 76480 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 76539 || | ||||| || ||| || | |||| || ||||| || ||||| ||| | || Sbjct 5256 CCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCA 5315 Query 76540 AATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAAC 76599 ||| |||| || || || |||||||| || ||||| || ||||||||| | | | Sbjct 5316 GATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCAT 5375 Query 76600 CCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGG 76659 |||||| || || || | | |||||| ||||||| | || ||| || || || Sbjct 5376 CCTCGCCGGCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGAGCTCCAGCAGCGCGG 5435 Query 76660 TCTCTGGT---CCAAGGATATGAAGGATCTCATGGTG-AAAGCGGGTGGTTCCATTCAAA 76715 ||||||| || | | ||| | ||| | | | | ||| | | || || Sbjct 5436 CCTCTGGTCGCCCGCGCTCAAGAACAAGCTCGTCTCGCACAACGGCTCGGTC----CAGC 5491 Query 76716 ATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGA 76775 ||| || ||||| || || |||||||| || ||| || |||||||| || | Sbjct 5492 GCATCGAGGAGATCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTGGGAGCTCCCGC 5551 Query 76776 TGAAAGATGTCATTGACATGGCCGCAGATCG-TGGTCGCTTCATTGATCAAAGTCAAAGT 76834 | | |||| ||||||||||| ||||| | | | || ||| || || || || Sbjct 5552 AGCGCGTCATCATCGACATGGCCGCCGATCGCTCGGC-CTACATCGACCAGAGCCAGTCG 5610 Query 76835 ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCG 76894 | || | | ||||| || || | |||||||| | || ||||| | ||||| Sbjct 5611 CTCAACGTCTACATGGGCGAGCCCTCGTTTGCCAAGCTCACCTCGATGCACTTCTACGCC 5670 Query 76895 TGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 ||| |||| ||||| ||||| |||||||| || || Sbjct 5671 TGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCG 5708 >seq4651 Length=3183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 261/393 (66%), Gaps = 11/393 (3%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTC--TCGCT-CCTTCGCCG 65077 |||||||||| | ||||| ||||| ||| | ||| || ||| ||||||||| Sbjct 1384 AGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCGTCGAGACCTTCGCCG 1443 Query 65078 AGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTA 65137 |||| || | | || || || ||||| |||||||||||||| |||||| | | Sbjct 1444 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGCTCCA 1503 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | |||||||| || |||||||| ||||| |||| || || | || Sbjct 1504 TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATCA 1563 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG--CGT-A 65254 ||| |||||||| |||||| || || ||| || ||| || | || || ||| | Sbjct 1564 GCCGCGATGAGGGCCTCCACTGCGACTTCGCC-TG--CCTCCTCTACACCATGCTCGTCA 1620 Query 65255 ATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 | | ||| | |||| | | ||| || ||| | ||||| || ||||||||||| Sbjct 1621 ACAAGCCCTCGACCG-ACGTGCCCAAGCAGATCATCCTCGAGGCTGTCGAGATTGAGAAG 1679 Query 65314 GGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCC 65373 | ||| | || | ||||| |||||||| |||||| | || |||| | Sbjct 1680 GAATTCGTGACCGAGTCGCTCCCCGTGGCCCTCATCGGCATGAACGCCGACCTCATGTGC 1739 Query 65374 GAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||||||| |||| || | || || |||||| Sbjct 1740 CAGTACATCGAGTTCGTCGCCGACCGCCTCCTC 1772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596434641042240