Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3858 107 2e-18 seq7266 96.9 3e-15 seq4764 96.9 3e-15 seq1785 96.9 3e-15 seq4792 91.5 1e-13 seq1932 87.8 1e-12 seq7588 84.2 2e-11 seq6806 82.4 6e-11 seq6454 82.4 6e-11 >seq3858 Length=3670 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| ||| |||| ||| | || Sbjct 710 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 769 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || |||||||| || || || ||| | ||| ||||||| Sbjct 770 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 829 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | |||||||| ||||| ||||||| | || |||| ||||||||| Sbjct 830 CAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 889 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 890 ATCCAGAAGGAGTCCAC 906 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || |||||||| || || || || | || ||||| ||||| ||| |||| ||| | Sbjct 479 AACATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGTCG 538 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || ||| | || || || ||||| || || || ||| | ||| || Sbjct 539 AGCGACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 598 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||| ||||||| | || |||| |||||| Sbjct 599 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTAC 658 Query 107733 AACATTCAAAAGGAGTCTAC 107752 ||||| || |||||||| || Sbjct 659 AACATCCAGAAGGAGTCGAC 678 >seq7266 Length=2119 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| || || || || | || ||||| ||||| ||| |||| ||| | | Sbjct 1371 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAG 1430 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | || || |||||||| || || || ||| | || ||||| Sbjct 1431 CGATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCA 1490 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||||| ||||||| | || |||| |||||||| Sbjct 1491 GCAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 1550 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 1551 CATCCAGAAGGAGTCCAC 1568 >seq4764 Length=3127 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||||||| |||| ||| | | Sbjct 295 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCGAG 236 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || ||||| || || || ||| | ||| |||||| Sbjct 235 CGACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCA 176 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 175 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 116 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||||||||| Sbjct 115 CATCCAGAAGGAGTCTAC 98 >seq1785 Length=5934 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| || ||||| || | || ||||| ||||| ||| |||| ||| | | Sbjct 4577 AATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 4518 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || |||||||| || || |||||| | || || || Sbjct 4517 CGACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCA 4458 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| ||||| ||||| ||||||| | || | || |||||||| Sbjct 4457 GCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAA 4398 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 4397 CATCCAGAAGGAGTCCAC 4380 >seq4792 Length=3108 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| |||| ||| | | Sbjct 1510 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 1569 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || ||||| || || || ||| | ||| ||| || Sbjct 1570 CGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 1629 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | |||||||| ||||| ||||||| | || |||| |||||||| Sbjct 1630 GCAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGCACTCTGGCTGACTACAA 1689 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 1690 CATCCAGAAGGAGTCCAC 1707 >seq1932 Length=5666 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| | || ||| | | Sbjct 5397 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCCAG 5456 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||||||| || || |||||| | || || || Sbjct 5457 CGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAAGGCATCCCTCCCGACCA 5516 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | |||||||| ||||| ||||||| | | |||| |||||||| Sbjct 5517 GCAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGTGCCCTGGCCGACTACAA 5576 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 5577 CATCCAGAAGGAGTCCAC 5594 >seq7588 Length=2028 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || ||||| |||| ||| | || Sbjct 34 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCCAGC 93 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || |||||| | || |||||| Sbjct 94 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCGCCCGATCAG 153 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 154 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 213 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || || |||||||| ||| | ||| Sbjct 214 ATCCAGAAGGAGTCCACGCTCCAC 237 >seq6806 Length=2266 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||| ||| |||| ||| | | Sbjct 2014 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 2073 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | || || || ||||| || || || ||| | || ||||| Sbjct 2074 CGATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCA 2133 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 2134 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTGGCCGACTACAA 2193 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 2194 CATCCAGAAGGAGTCGAC 2211 >seq6454 Length=2394 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || |||||||| || || || || | || ||||| ||||| ||| |||| ||| | Sbjct 297 AACATGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTTGAGTCG 238 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || ||| | || || || ||||| || || || ||| | ||| ||| Sbjct 237 AGCGACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAT 178 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | ||||| || ||||| ||||||| | || | || |||||| Sbjct 177 CAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCCGACTAC 118 Query 107733 AACATTCAAAAGGAGTCTAC 107752 ||||| || ||||| || || Sbjct 117 AACATCCAGAAGGAATCGAC 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398788819993522