Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1785 109 4e-19 >seq1785 Length=5934 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || |||||||| || || || ||||| || || || | ||||||| || ||||| || Sbjct 4146 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCGAGCTGC 4205 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 |||||||| | || | | ||||||||||| ||||||||||| ||||| || | || Sbjct 4206 TTGCCAGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGGATCTTC 4265 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || || || | || | ||||| || || || || ||||| || || ||||| || Sbjct 4266 TGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTG 4325 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | ||| || || || |||||||| Sbjct 4326 AGGGTCTTGACGAAGATCTGCAT 4348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385134232441818