Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1075 102 6e-16 seq787 102 6e-16 seq275 100 2e-15 seq6015 95.1 9e-14 seq1473 95.1 9e-14 seq12127 93.3 3e-13 seq1485 93.3 3e-13 seq9848 87.8 1e-11 seq1582 87.8 1e-11 seq16222 86.0 5e-11 seq8422 86.0 5e-11 >seq1075 Length=7598 Score = 102 bits (112), Expect = 6e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 1039927 ACTGACCTTGACATTCCATTTTGAATCCAAAAGCAAATTAAGCGACTTCAAATCTCGATG 1039986 |||||||||||| ||||| || || || | ||||||||| |||||||| | ||| ||||| Sbjct 5891 ACTGACCTTGACGTTCCACTTGGAGTCGAGAAGCAAATTGAGCGACTTGAGATCGCGATG 5832 Query 1039987 AACAATACCTGATGAATGAAGAAAATGCATACCTTTTGAAGCCTGATAAGCCATCTTAAT 1040046 || || || || || || || || ||||| || || | ||||| || |||||||| | Sbjct 5831 GACGATTCCGGACGAGTGGAGGAAGTGCATGCCCTTGGCCGCCTGGTAGGCCATCTTGTT 5772 Query 1040047 TTTAAGAGCATAAGGAATTTCTGGAATAAGTTCGTT 1040082 ||||| | || || || ||||| || ||||| Sbjct 5771 GCGCAGAGCGAACGGGATGTCCGGAATCAGCTCGTT 5736 >seq787 Length=8680 Score = 102 bits (112), Expect = 6e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1047891 ACTTCCCACATAACAATTCCAAAAGAAAATACATCGACCTTTTCGTCATAGATATCATTA 1047950 ||||||||||| | | ||| || || || || ||| |||| ||||| || | || Sbjct 529 ACTTCCCACATGATGACTCCGAACGAGAACACGTCGGCCTTCTCGTCGTACTTCTCTCCG 470 Query 1047951 CGAATAATTTCAGGAGCAGTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCT 1048010 || | || || || || ||||| || || || || || || |||||| |||||||||| Sbjct 469 CGGAGGATCTCGGGCGCGGTCCAGCAGGGCGTGCCGCAGCGGGTCATGGTGGCGTTCTCC 410 Query 1048011 TCTTTGATGCGAGCAAATCCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGA 1048070 || |||||||| ||||| || || ||||| | || || ||||| || || || | || Sbjct 409 TCCTTGATGCGCGCAAACCCGAAGTCGGCCACCTTCACGTTCCAGTTCTCGTCCACCAGC 350 Query 1048071 ATATTTGATGGCTTAATGTCACGATG 1048096 | || || ||||| | ||| || || Sbjct 349 AGGTTCGACGGCTTCAGGTCGCGGTG 324 >seq275 Length=13074 Score = 100 bits (110), Expect = 2e-15 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 1047891 ACTTCCCACATAACAATTCCAAAAGAAAATACATCGACCTTTTCGTCATAGATATCATTA 1047950 ||||||||||| | || || || || | || ||| |||||||||| || | || Sbjct 11538 ACTTCCCACATGATGATGCCGAACGAGTACACGTCGGCCTTTTCGTCGTACTTCTCGCCG 11479 Query 1047951 CGAATAATTTCAGGAGCAGTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCT 1048010 || || | || || || ||||| ||||| || ||||| || ||||| | |||||||| Sbjct 11478 CGGATGACCTCCGGTGCCGTCCAGCAAGGGGTGCCACAGCGGGTCATCGTCGCGTTCTCC 11419 Query 1048011 TCTTTGATGCGAGCAAATCCAAAATCGGCAATTTTGACATTCCAATTTTCATC 1048063 || |||||||| || |||||||| ||||| | || || ||||| || || || Sbjct 11418 TCCTTGATGCGCGCGAATCCAAAGTCGGCCACCTTCACGTTCCAGTTCTCGTC 11366 >seq6015 Length=2559 Score = 95.1 bits (104), Expect = 9e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1049880 ACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATGAGTG 1049939 || ||||| |||||||| || || || || || | ||||||||||| ||||| | Sbjct 1578 ACCTTGACGTTCCACTTGGAGTCGAGCAGCAGGTTGAGGGACTTGAGATCGCGATGCACG 1519 Query 1049940 ATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGACTTTG 1049999 || || |||||||||||||| ||||| ||||| || ||||| || || | ||||| || Sbjct 1518 ATGCCGGAGGAATGCAAGAAGTGCATGCCCTTGGAGGCTTGGTAGGCGACCTTGACCTTC 1459 Query 1050000 AGAGCAAAAGGTATATCTGGGATGAGTTCGTTTTTCAACA 1050039 ||||| | || || || ||| || ||||| | || || Sbjct 1458 AGAGCGATCGGGATCTCCACGATCAGCTCGTTGTGCAGCA 1419 >seq1473 Length=6523 Score = 95.1 bits (104), Expect = 9e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1049880 ACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATGAGTG 1049939 || ||||| |||||||| || || || || || | ||||||||||| ||||| | Sbjct 273 ACCTTGACGTTCCACTTGGAGTCGAGCAGCAGGTTGAGGGACTTGAGATCGCGATGGACG 332 Query 1049940 ATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGACTTTG 1049999 || || |||||||||||||| ||||| ||||| || |||||||| || | ||||| || Sbjct 333 ATGCCGGAGGAATGCAAGAAGTGCATGCCCTTGGAGGCTTGATAGGCGACCTTGACCTTC 392 Query 1050000 AGAGC 1050004 ||||| Sbjct 393 AGAGC 397 >seq12127 Length=1187 Score = 93.3 bits (102), Expect = 3e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1050051 GAGCCAAGAGCCATGAATTCCATTACAATGCACATTTTGGGTGGTTTAGTTGAAGCAGCC 1050110 || || || |||||||| ||||| || || |||||||||||||| || || || || ||| Sbjct 703 GATCCGAGGGCCATGAACTCCATCACGATACACATTTTGGGTGGCTTGGTCGACGCCGCC 644 Query 1050111 ATGAAAAGAACAACGTTAGGATGTCGCAAAGTTGTCATTACTCTGACCT 1050159 ||||| || || ||||| || ||||||| | |||||||| || |||| Sbjct 643 ATGAACAGCACCACGTTGGGGTGTCGCAGCGCCGTCATTACCCTCACCT 595 >seq1485 Length=6502 Score = 93.3 bits (102), Expect = 3e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1047891 ACTTCCCACATAACAATTCCAAAAGAAAATACATCGACCTTTTCGTCATAGATATCATTA 1047950 ||||||||||| || | || || || || || ||| || ||||| || | || Sbjct 5985 ACTTCCCACATGACCACGCCGAAGGAGAACACGTCGGCCCGCTCGTCGTACTTGTCCCCG 6044 Query 1047951 CGAATAATTTCAGGAGCAGTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCT 1048010 || || | || || || ||||| || || || || || || |||||| |||||||||| Sbjct 6045 CGGATCACCTCCGGCGCCGTCCAGCAGGGCGTGCCGCAGCGGGTCATGGTGGCGTTCTCC 6104 Query 1048011 TCTTTGATGCGAGCAAATCCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGA 1048070 || |||||||| || || || || ||||| | || || ||||| || || || | ||| Sbjct 6105 TCCTTGATGCGCGCGAACCCGAAGTCGGCCACCTTCACGTTCCAGTTCTCGTCCACGAGC 6164 Query 1048071 ATATTTGATGGCTTAATGTCACGATG 1048096 | || || ||||| | ||| || || Sbjct 6165 AGGTTCGACGGCTTGAGGTCCCGGTG 6190 >seq9848 Length=1519 Score = 87.8 bits (96), Expect = 1e-11 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1047969 GTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCTTCTTTGATGCGAGCAAAT 1048028 ||||| || || || || || || |||||| ||||||||||||| |||||||| || || Sbjct 568 GTCCAGCAGGGGGTGCCGCAGCGGGTCATGGTGGCGTTCTCTTCCTTGATGCGCGCGAAC 509 Query 1048029 CCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGAATATTTGATGGCTT 1048084 || || ||||| | || || ||||| || || |||| ||| | ||| || ||||| Sbjct 508 CCGAAGTCGGCCACCTTCACGTTCCAGTTCTCGTCGACGAGCAGATTGGAGGGCTT 453 >seq1582 Length=6332 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1047951 CGAATAATTTCAGGAGCAGTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCT 1048010 || || || || || || ||||| || || || || || || |||||| |||| ||||| Sbjct 505 CGGATGATCTCCGGCGCCGTCCAGCAGGGCGTGCCGCAGCGGGTCATGGTGGCATTCTCC 446 Query 1048011 TCTTTGATGCGAGCAAATCCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGA 1048070 ||||||||||| || || || || ||||| | || || ||||| || ||||| | ||| Sbjct 445 TCTTTGATGCGCGCGAACCCGAAGTCGGCCACCTTCACGTTCCAGTTCTCATCCACGAGC 386 Query 1048071 ATATTTGATGGCTTAATGTCACGATG 1048096 | || || ||||| | ||| || || Sbjct 385 AGGTTCGACGGCTTGAGGTCGCGGTG 360 >seq16222 Length=657 Score = 86.0 bits (94), Expect = 5e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1047967 CAGTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCTTCTTTGATGCGAGCAA 1048026 ||||||| || || || || || || |||||| |||||||||| ||||||||||| || | Sbjct 341 CAGTCCAGCAGGGCGTGCCGCAGCGGGTCATGGTGGCGTTCTCCTCTTTGATGCGCGCGA 400 Query 1048027 ATCCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGAATATTTGATGGCTTAA 1048086 | || || ||||| | || | ||||| | || |||| ||| | || |||||||| | Sbjct 401 ACCCGAAGTCGGCCACCTTTAGGTTCCAGTCCTCGTCGACGAGCAGGTTCGATGGCTTGA 460 Query 1048087 TGTCACGATG 1048096 ||| || || Sbjct 461 GGTCGCGGTG 470 >seq8422 Length=1807 Score = 86.0 bits (94), Expect = 5e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1049880 ACTTTGACATTCCACTTAATATCAAGAAGTAGATTCAAAGACTTGAGATCACGATGAGTG 1049939 || ||||| |||||||| ||| || | ||||| | ||||||||||| ||||| Sbjct 649 ACCTTGACGTTCCACTTGGAATCGAGCAACAGATTGAGCGACTTGAGATCGCGATGCACA 708 Query 1049940 ATTCCTGAGGAATGCAAGAAATGCATACCCTTTGATGCTTGATATGCAATTTTGACTTTG 1049999 || || ||||| |||| ||||||||| ||||| | |||||| || || || ||| | Sbjct 709 ATGCCGGAGGAGTGCAGGAAATGCATGCCCTTGGCTGCTTGGTACGCCATCTTGTTCCGG 768 Query 1050000 AGAGCAAAAGGTATATCTGGGATGAGTTCGTTTTTCAACA 1050039 || || || || | || || ||||| ||||| | || || Sbjct 769 AGCGCGAAGGGCAGGTCGGGAATGAGCTCGTTGTGCAGCA 808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739741864682148