Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq378 131 2e-25 seq6713 109 5e-19 seq7266 107 2e-18 seq3858 104 2e-17 seq7588 98.7 9e-16 seq1932 95.1 1e-14 seq4764 89.7 5e-13 seq1785 89.7 5e-13 seq2256 87.8 2e-12 seq4204 86.0 6e-12 seq6806 84.2 2e-11 >seq378 Length=11515 Score = 131 bits (144), Expect = 2e-25 Identities = 325/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTC 147518 |||| || ||||| |||||||||||| ||| |||| || || ||||||| |||| || Sbjct 4841 GCGAGCGAGGCCAGGTTGCAGACGGCCACCTCGTCGGGCGACG-TGTACTGGACGACCTC 4783 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 | ||||||||| | | ||| || | | ||||| ||| || | ||||| Sbjct 4782 CGTGCACAGGTTCGACGACTGAATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCA 4723 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AA 147635 ||||| ||| | |||||||| || ||||||||||| |||| || | ||| || Sbjct 4722 GGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAA 4663 Query 147636 CCTATGCAGGTCCTGCGCTCGCACC-CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 || ||| ||||| || ||| ||| || | ||||||||| | ||||| |||| Sbjct 4662 CCA---CAGCTCCTGGGCCTTGACCACGCGGC-GCGCGCGGCCCTCCTGCTCGTAGCGCT 4607 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 ||||| | ||| ||||| | ||| | | ||| |||||||| || | || | Sbjct 4606 CGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGCCTCGTTGGGGC 4547 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | |||||||| | || ||| | ||||| ||| ||||| || || | ||||| Sbjct 4546 AAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACA 4487 Query 147815 GCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAA 147874 | |||| | |||||||| || | ||||| ||| ||| |||| | | Sbjct 4486 GGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGA 4427 Query 147875 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCT 147934 | | | | ||||||| ||||||||||| || | ||||| ||| | ||||| || |||| Sbjct 4426 GGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCGCT 4367 Query 147935 TTCCGCC 147941 | || || Sbjct 4366 TACCACC 4360 >seq6713 Length=2293 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| || |||||| || |||||||| || |||| Sbjct 204 GACTCCTTTTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCG 145 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || || || |||| Sbjct 144 AAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 85 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| ||| ||| || |||| || | ||| ||||| ||||| || || Sbjct 84 TTCTCGATGGTATCGCTCGACTCGACCTCGAGAGTAATCGTCTTACCGGTCAGGGTCTTC 25 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 24 ACGAAGATCTGCATG 10 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || |||||| ||| |||||||| || |||| Sbjct 432 GACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGACCATCCTCGAGCTGCTTGCCGGCG 373 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || ||||| ||||| || || || || || || |||| Sbjct 372 AAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 313 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||| || |||| || | || || || || || || || Sbjct 312 TTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTG 253 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 252 ACGAAGATCTGCATG 238 >seq7266 Length=2119 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || |||||||| ||||||| Sbjct 1565 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCG 1506 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| ||||| ||||| || || || || ||||| |||| Sbjct 1505 AAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACG 1446 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| ||| ||| || |||| || | || || || ||||| || || Sbjct 1445 TTCTCGATGGTATCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 1386 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 1385 ACGAAGATTTGCAT 1372 >seq3858 Length=3670 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || |||||| || |||||||| ||||| | Sbjct 903 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCCGCG 844 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || ||||| || || || || ||||| |||| Sbjct 843 AAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACG 784 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | | ||| || |||| || | || || || ||||| || || Sbjct 783 TTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTG 724 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 723 ACGAAGATCTGCATG 709 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || |||||||| || |||| Sbjct 675 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 616 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || || || || | Sbjct 615 AAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACG 556 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| ||| ||| || |||| || | || || |||||||| || || Sbjct 555 TTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 496 Query 132110 ATGAAAATCTGCATG 132124 | ||| || |||||| Sbjct 495 ACGAAGATTTGCATG 481 >seq7588 Length=2028 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || |||||||| || |||| Sbjct 227 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 168 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || |||||||| || || || || || |||| Sbjct 167 AAGATGAGACGCTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCACG 108 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | | ||| || |||| || | ||| || || ||||| || || Sbjct 107 TTCTCGATGGTGTCGCTGGACTCGACCTCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTG 48 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 47 ACGAAGATCTGCAT 34 >seq1932 Length=5666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||| | || | | | ||||| || || |||||||||||| || || Sbjct 5619 ACGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGC 5560 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| || |||||||| ||||| | |||| |||||||| || || ||||| ||||| Sbjct 5559 ACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCC 5500 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| ||||| |||| | || | || ||| | | ||| || || | Sbjct 5499 TTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCCAG 5440 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || || || | ||| |||||||| Sbjct 5439 GGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 5398 >seq4764 Length=3127 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || |||||| || |||||||| || |||| Sbjct 101 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCG 160 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| || || ||||| || || || || || || || | Sbjct 161 AAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACG 220 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| ||| ||| || |||| || | || || || ||||| || || Sbjct 221 TTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTC 280 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 281 ACGAAGATCTGCAT 294 >seq1785 Length=5934 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||| | || | | | ||||| || || |||||||||||| | || Sbjct 4355 ACGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGT 4414 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || |||||||| ||||| | | |||| |||||||| || || ||||| ||||| Sbjct 4415 GCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCC 4474 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || ||||| |||| | || | || ||| | | ||| || |||| Sbjct 4475 TTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAG 4534 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||| || || | ||| || ||||| Sbjct 4535 GGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 4576 >seq2256 Length=5188 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 51732 GCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCG 51791 ||| |||| ||||| | ||||| ||||| ||| | | | | || | ||||| | Sbjct 4874 GCCACGACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCCTCGGGTCCACCGTGCTTC 4815 Query 51792 CTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAAT 51851 | ||| |||||||||||| ||||||| | |||||||||| || |||||||||| Sbjct 4814 TTACCGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAAC 4755 Query 51852 TCGTGCACGTGGAATCCGTGCAGGCC 51877 ||||| |||||||| ||||| |||| Sbjct 4754 TCGTGGACGTGGAAGCCGTGGGGGCC 4729 >seq4204 Length=3449 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | || || || |||||||| || |||| Sbjct 204 GACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 145 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || || || |||| Sbjct 144 AAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 85 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| ||| ||| ||| || |||| || | ||| ||||| || || || || Sbjct 84 TTCTCGATAGTGTCGCTCGACTCGACCTCGAGAGTAATCGTCTTACCCGTGAGGGTCTTC 25 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 24 ACGAAGATCTGCATG 10 >seq6806 Length=2266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || || || || |||||||| || || | Sbjct 2208 GACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 2149 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| ||||| ||||| || || || || || || |||| Sbjct 2148 AAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 2089 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||| | | ||| || |||| || | || || || || || || || Sbjct 2088 TTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTC 2029 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 2028 ACGAAGATCTGCAT 2015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476503378631280