Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6713 143 2e-29 seq7266 136 4e-27 seq4792 136 4e-27 seq4764 136 4e-27 seq1932 136 4e-27 seq4204 134 1e-26 seq3858 134 1e-26 seq1785 132 4e-26 seq15283 122 8e-23 seq6454 120 3e-22 seq140 120 3e-22 >seq6713 Length=2293 Score = 143 bits (158), Expect = 2e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| ||||||| ||| || |||| || |||||||| || || || Sbjct 202 CTCCTTTTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 143 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | || |||||||||| |||||| ||||||| | Sbjct 142 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 83 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || |||||||| || ||||| | || ||||| ||||| |||| || ||||| Sbjct 82 CTCGATGGTATCGCTCGACTCGACCTCGAGAGTAATCGTCTTACCGGTCAGGGTCTTCAC 23 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 22 GAAGATCTGCAT 11 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| ||| || | || || |||||||| || || || Sbjct 430 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGACCATCCTCGAGCTGCTTGCCGGCGAA 371 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | || |||||||||| |||||| ||||||| | Sbjct 370 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 311 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||| | ||||| || || || || | || || Sbjct 310 CTCGATGGTGTCCGAGCTC---TCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTT 254 Query 35722 CACAAATATCTGCAT 35736 || || |||||||| Sbjct 253 GACGAAGATCTGCAT 239 >seq7266 Length=2119 Score = 136 bits (150), Expect = 4e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || |||| || ||||||||||| || || Sbjct 1563 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 1504 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | ||| | || |||||||||| |||||||||||||| | Sbjct 1503 GATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 1444 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || |||||||| || ||||| | ||||| || || || |||| || ||||| Sbjct 1443 CTCGATGGTATCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 1384 Query 35725 AAATATCTGCATT 35737 || || |||||| Sbjct 1383 GAAGATTTGCATT 1371 >seq4792 Length=3108 Score = 136 bits (150), Expect = 4e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| || || |||| || |||||||||||||| || Sbjct 1702 CTCCTTCTGGATGTTGTAGTCAGCCAGAGTGCGGCCGTCCTCGAGCTGCTTACCCGCGAA 1643 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | || |||||||||| |||||| ||||||| | Sbjct 1642 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 1583 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| || || ||||| | ||||| || || || || | || ||||| Sbjct 1582 CTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 1523 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 1522 GAAGATCTGCATT 1510 >seq4764 Length=3127 Score = 136 bits (150), Expect = 4e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || |||| || |||||||| || || || Sbjct 103 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 162 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| |||| |||| || |||||||||| |||||| ||||| | | Sbjct 163 GATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTT 222 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||||||| || ||||| | || || || || || |||| || ||||| Sbjct 223 CTCGATCGTGTCGCTCGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTCAC 282 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 283 GAAGATCTGCATT 295 >seq1932 Length=5666 Score = 136 bits (150), Expect = 4e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| || || |||| || |||||||||||||| || Sbjct 5589 CTCCTTCTGGATGTTGTAGTCGGCCAGGGCACGGCCGTCCTCGAGCTGCTTACCCGCGAA 5530 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | || ||||||||| ||||||||||||| | Sbjct 5529 GATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTTTGCTTCACGTT 5470 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| || || ||||||| ||||| || || || || | || ||||| Sbjct 5469 CTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 5410 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 5409 GAAGATCTGCATT 5397 >seq4204 Length=3449 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||| | || || |||| || |||||||| || || || Sbjct 202 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 143 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | || |||||||||| |||||| ||||||| | Sbjct 142 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 83 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||||| || ||||| | || ||||| |||||||| | || ||||| Sbjct 82 CTCGATAGTGTCGCTCGACTCGACCTCGAGAGTAATCGTCTTACCCGTGAGGGTCTTCAC 23 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 22 GAAGATCTGCAT 11 >seq3858 Length=3670 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || |||| || |||||||||||||| || Sbjct 901 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAA 842 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| |||| || | || |||||||||| |||||||||||||| | Sbjct 841 GATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 782 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||||| || || ||||| | ||||| || || || |||| || || || Sbjct 781 CTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGAC 722 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 721 GAAGATCTGCAT 710 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || |||| || |||||||| || || || Sbjct 673 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 614 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||||| | | Sbjct 613 GATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTT 554 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||||||| || ||||| | ||||| || || || |||| || ||||| Sbjct 553 CTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 494 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 493 GAAGATTTGCAT 482 >seq1785 Length=5934 Score = 132 bits (146), Expect = 4e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||| | || || |||| || ||||||||||| ||||| Sbjct 4385 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAA 4444 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | || ||||||||| |||||||||||||| | Sbjct 4445 GATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTT 4504 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| || || ||||| | ||||| || || || |||| || || || Sbjct 4505 CTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGAC 4564 Query 35725 AAATATCTGCATT 35737 || || |||||| Sbjct 4565 GAAGATTTGCATT 4577 >seq15283 Length=765 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || |||| || |||||||| || || || Sbjct 192 CTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 133 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | || |||||||||| |||||| ||||||| | Sbjct 132 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 73 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| || || ||||| | ||||| || || || || | || ||||| Sbjct 72 CTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 13 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 12 GAAGATCTGCAT 1 >seq6454 Length=2394 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||||| | ||| || |||| || |||||||| ||||| || Sbjct 104 TCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 163 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | |||||||| || | || | || |||||||||| |||||| ||||| | | Sbjct 164 ATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTC 223 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||||||| || ||||| | ||||| || || || || | || ||||| Sbjct 224 TCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACG 283 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 284 AAGATTTGCAT 294 >seq140 Length=17166 Score = 120 bits (132), Expect = 3e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 35552 TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAAC 35611 || |||||| | ||||| | ||| || |||| || |||| ||||||||| || || | Sbjct 1480 TGGATGTTGCAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTCCTTACCCGCGAAGATGAGA 1539 Query 35612 CGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACC 35671 |||||||| || | ||||| | |||||||||| || ||||||||||| | | | Sbjct 1540 CGCTGCTGATCGGTAGGAATACCCTCCTTGTCCTGGACCTTTTGCTTCACGCTCTCGATG 1599 Query 35672 GTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATC 35731 || ||||| ||||| ||||| | ||||| || || | || | ||| |||||||| ||| Sbjct 1600 GTATCGCTGGATTCGACCTCGAGGGTGATGGTCTTGCAGGTGATAGTCTTCACAAAGATC 1659 Query 35732 TGCATT 35737 |||||| Sbjct 1660 TGCATT 1665 Score = 105 bits (116), Expect = 6e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| || || |||| || |||||||| || || || Sbjct 1245 CTCCTTCTGGATGTTGTAGTCGGCCAGAGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1304 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||||||| | Sbjct 1305 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 1364 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||| | ||||| || || || |||| || || Sbjct 1365 CTCGATGGTGTCCGAGCTC---TCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTT 1421 Query 35722 CACAAATATCTGCAT 35736 || || |||||||| Sbjct 1422 GACGAAGATCTGCAT 1436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450691619217840