Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4651 131 2e-25 >seq4651 Length=3183 Score = 131 bits (144), Expect = 2e-25 Identities = 369/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | |||||| || | ||| Sbjct 1598 GCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 1539 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 1538 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 1480 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || || ||| | || || | ||| || | || | || | Sbjct 1479 AGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCT 1420 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 1419 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 1360 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | || || | || || || || || || || | || | Sbjct 1359 CGCGGAAGAGGCGGTCCTTCTCGACGGAGTCCTTGACGTAGGTGTCGATGAGGAGCGAGT 1300 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || || ||||| ||||| || || | || || | Sbjct 1299 ACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGG 1240 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | ||| || ||| || || || |||| Sbjct 1239 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAG 1180 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 | || || || ||||| || || || || || | | || || | ||| | ||| | Sbjct 1179 CCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 1121 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| ||||| || || ||||| || || ||||| ||| Sbjct 1120 CAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 1061 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 1060 TTCTTGTACATCTCCCAGAT 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686753404056720