Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7266 118 9e-22 seq7588 116 3e-21 seq3858 109 5e-19 seq15283 100 2e-16 seq4792 98.7 8e-16 seq6806 95.1 1e-14 seq6454 91.5 1e-13 seq1785 89.7 4e-13 seq6713 86.0 5e-12 seq1932 86.0 5e-12 seq140 86.0 5e-12 >seq7266 Length=2119 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||||| || | || | || | || || || || || || ||||||||| Sbjct 1601 TTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1542 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | |||| |||| |||||||| ||||||||| | ||||||||||| ||||| || Sbjct 1541 GCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCGGGA 1482 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || |||||| | |||| | | || | || || | | || Sbjct 1481 GGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTCGACTCG 1422 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||||| ||||| || ||||| ||||||||||| Sbjct 1421 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 1372 >seq7588 Length=2028 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||||||| || | |||| |||| |||||||| || || Sbjct 231 CGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 172 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| ||||| ||||| | || || || || |||||| | || Sbjct 171 GGCGAAGATGAGACGCTGCTGATCGGGCGGGATGCCTTCCTTGTCCTGGATCTTCTGCTT 112 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | | || | ||||| ||| || || || ||||| || | ||||| ||||| || Sbjct 111 CACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGAGTAATCGTCTTGCCGGTCAGGGT 52 Query 27230 TTTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 51 CTTGACGAAGATCTGCATA 33 >seq3858 Length=3670 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||||| || | || | || | || || || || || || ||||||||| Sbjct 939 TTGCCACCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 880 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | | || |||| |||||||| ||||| ||| | ||||||||||| |||||||| Sbjct 879 GCCAGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGATCCGGG 820 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || |||||| | |||| | | || | || || ||| || Sbjct 819 GGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTGGACTCG 760 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||||| ||||| || || || ||||| ||||| Sbjct 759 ACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 710 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| |||| |||||||| || ||| Sbjct 678 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 619 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || |||||| | || Sbjct 618 GCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 559 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | ||||| ||||| || Sbjct 558 ACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 499 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 498 TTCACGAAGATTTGCAT 482 >seq15283 Length=765 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||||| || | || | || | || || || || || || |||||||| Sbjct 230 TTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 171 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | |||| |||| |||||||| || |||||| | ||||||||||| || ||||| Sbjct 170 GCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 111 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || |||||| | |||| | | || | ||||| ||| || Sbjct 110 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCG 51 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||||| || || || ||||| ||||| ||||| Sbjct 50 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1 >seq4792 Length=3108 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || |||| |||| |||||||| ||||| Sbjct 1707 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTGCGGCCGTCCTCGAGCTGCTTACCC 1648 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | ||| Sbjct 1647 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 1588 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| || || || || || || | ||||| || || || Sbjct 1587 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 1528 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 1527 TTCACGAAGATCTGCAT 1511 >seq6806 Length=2266 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || |||| |||| |||||||| || || Sbjct 2211 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCA 2152 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | ||||| || || |||||| | ||| Sbjct 2151 GCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 2092 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || ||| || || || || || || | ||||| || || || Sbjct 2091 ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 2032 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 2031 TTCACGAAGATCTGCAT 2015 >seq6454 Length=2394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||||||||| | || | || | || | || || || || || || ||||||||| Sbjct 67 GCCTCCGCGAAGACGGAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGC 126 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | || |||| |||||||| || || ||| | ||||| ||||| ||||| || || Sbjct 127 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGATCAGGGGG 186 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| | || | | | || | ||||| | | ||||| Sbjct 187 GATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATCGTGTCGCTCGACTCAAC 246 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || || ||||| ||||||||||| Sbjct 247 CTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 294 >seq1785 Length=5934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | |||| |||| |||||||| ||||| Sbjct 4380 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCA 4439 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || || || || | || || || || |||||| | ||| Sbjct 4440 GCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTTTGCTTC 4499 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| || || || || || || | ||||| ||||| || Sbjct 4500 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 4559 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 4560 TTGACGAAGATTTGCAT 4576 >seq6713 Length=2293 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | | || | || |||||||| || ||| Sbjct 435 GTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGACCATCCTCGAGCTGCTTGCCG 376 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || |||||| | ||| Sbjct 375 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 316 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || |||| ||||| || || || Sbjct 315 ACGTTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTC 256 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 255 TTGACGAAGATCTGCAT 239 >seq1932 Length=5666 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | || |||| |||||||| ||||| Sbjct 5594 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGCACGGCCGTCCTCGAGCTGCTTACCC 5535 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | || || || || ||||| | ||| Sbjct 5534 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTTTGCTTC 5475 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| || || || || || || | ||||| || || || Sbjct 5474 ACGTTCTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 5415 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 5414 TTCACGAAGATCTGCAT 5398 >seq140 Length=17166 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27063 TGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGA 27122 || || ||| ||||| | | |||| |||| ||||||| ||||| ||| | |||||| Sbjct 1480 TGGATGTTGCAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTCCTTACCCGCGAAGATGAGA 1539 Query 27123 CGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACA 27182 ||||| ||||| | || | |||||| || || || ||| | |||| | | || | Sbjct 1540 CGCTGCTGATCGGTAGGAATACCCTCCTTGTCCTGGACCTTTTGCTTCACGCTCTCGATG 1599 Query 27183 GTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATT 27242 || || ||| ||| || || || || || | |||| || | ||| ||||||||||| Sbjct 1600 GTATCGCTGGATTCGACCTCGAGGGTGATGGTCTTGCAGGTGATAGTCTTCACAAAGATC 1659 Query 27243 TGCAT 27247 ||||| Sbjct 1660 TGCAT 1664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424840672484976