Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4651 129 2e-24 seq378 93.3 1e-13 >seq4651 Length=3183 Score = 129 bits (142), Expect = 2e-24 Identities = 318/469 (68%), Gaps = 14/469 (3%) Strand=Plus/Plus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | ||||||||||||| || | |||||||| ||||| | |||||||| Sbjct 1149 TTCATCAAGCACGTCTTGGCCTTCTTCGCGGCTAGCGACGGCATCGTGGCCGAGAATCTC 1208 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| || Sbjct 1209 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTT 1265 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 ||| ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 1266 CAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGACAC-CTACGT 1324 Query 443592 CC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATCAC 443650 | | || | ||| || | ||||| | || |||| ||| ||| Sbjct 1325 CAAGGACTCCGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTCAA 1384 Query 443651 TGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGTCG 443706 | ||| | |||||| | ||||| || ||| || | | || | ||||| || Sbjct 1385 GAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGCCG 1443 Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || |||| || || | ||||| || | || || ||||||||| || ||| Sbjct 1444 AGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-TCC 1502 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||||| Sbjct 1503 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGATC 1562 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 || || || ||||| | || |||||||||||||| || |||||||||| Sbjct 1563 AGCCGCGATGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 1611 >seq378 Length=11515 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 5659 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 5718 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 5719 GCCGCCAACGCGATCCAGTTCACCGT 5744 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 5258 AGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 5317 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | | |||||| | | Sbjct 5318 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCATCC 5377 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 5378 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 5409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587967695655610