Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq378 132 6e-26 >seq378 Length=11515 Score = 132 bits (146), Expect = 6e-26 Identities = 691/1090 (63%), Gaps = 22/1090 (2%) Strand=Plus/Minus Query 110627 GACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCA 110686 |||||||| || || || ||| || | ||||||| |||||| | | || || Sbjct 5444 GACCAGAGGCCGCGCTGCTGGAGCTCGCGCAGAAGGTGCTCGTTGACGACGGTGAAGTCG 5385 Query 110687 CCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTA 110746 || |||||| | | | ||||||||| || ||||| || |||||||| || || || Sbjct 5384 CCGGCGAGGATGCGGCGGGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACTCGTTGTTG 5325 Query 110747 CCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGA 110806 |||| ||| || | ||| ||||| || ||||| || |||| | || ||| || ||| Sbjct 5324 CCCAGGATCTGCGAGGTCGAGGCCGTGGGCATGGGCGCCACGAGGAGCGAGTTGCGCAGA 5265 Query 110807 CCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCT 110866 || | || |||| | ||| ||||||| | || | | | | Sbjct 5264 CCGTGCTGGGCGATGTTGGCGCGGAGCGTGGCCCAGTCCCACCTGTCCGACGGCACGACG 5205 Query 110867 TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAG 110926 |||| | ||| ||| ||| || | ||||||||| || ||||| |||| | ||| Sbjct 5204 CCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGACGCGGGCGAGCCCTCGTAGGTCTGGTAG 5145 Query 110927 GAACCTTGGGCTTCAGCCAATTCACAGCTCG---CCTCCAGGGATGCGTGATACATGGTT 110983 | || | | | | || | || | ||| | |||||| |||| || ||||| Sbjct 5144 GTGCCCTCGACCTGCGCGAGCTC---GTTCGAGGCGACCAGGGCGGCGTAGTAGATGGTC 5088 Query 110984 TCAAAGATACGAGCA-TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA 111042 || ||||| | || || | ||| ||| || || || | | || ||| | Sbjct 5087 TCGAAGATG-GCGCGGTTGAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGGCGCATGAT 5029 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || || || || || || || || || || | || || || ||||| ||||| || || Sbjct 5028 CATGAAGACGTCGGCCAGGCCCTGCACTCCGATGCCGATGGGCCTGTGGCGCATGTTCGA 4969 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || || || ||| ||||| || | || |||| || || ||| || || || Sbjct 4968 GTTGCGGGC---CTCGGGCACGGGGTAGTAGTTGATGTCGATCACCTTGTTGAGGTTCTT 4912 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 ||| || | ||| || || || || || | | ||||| || || | | || Sbjct 4911 GGTGACCACCTTCACGACGTCGTGCAGCTTCTGGTGGTCAAACTCGCC-GT-TGGTGAT- 4855 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 || |||| || || |||| || |||| ||||| || ||| ||| || || Sbjct 4854 GA---ACTTGGGCAGCGCGAGCGAGGCCAGGTTGCAGACGGCCACCTCGTCGGGCGACGT 4798 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 ||||| | | || || || | ||| || || ||| || || | | || ||||| Sbjct 4797 GTACTGGACGACCTCCGTGCACAGGTTCGACGACTGAATGGTGCCGAGGTGCTGCTGGTT 4738 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||| |||||| || |||||||| |||||||||||||| || ||||| |||| || Sbjct 4737 GGACTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCGGTCTCGATCTGCGA 4678 Query 111400 TTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGC 111459 | ||| || || ||| | || ||| || | | | || || |||||| Sbjct 4677 CTCGAGGATGGCGAACCACAGCTCCTGGGCCTTGACCACGCGGCGCGCGCGGCCCTCCTG 4618 Query 111460 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC 111519 |||||| ||| | || ||||||| ||| || |||| | || || || || Sbjct 4617 CTCGTAGCGCTCGTACTTCTCCTCGAACTCCTTGCCCCACGAGTCGAACAGGCCGGGGGC 4558 Query 111520 CTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 || || || || || || ||||| | || || ||| || ||||||||||| ||||| Sbjct 4557 CTCGTTGGGGCAAAAGAGCGACCAGTCGCCGCCCGTCTCCACGCGCTTCATGAACAGGTC 4498 Query 111580 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 111639 |||||||||||| | |||||||| | || ||| || | || ||||| Sbjct 4497 GGGAATCCACAGGCCGTAGAAGAGATCGCGGGCGCGGTTCTCCTCCTTGCCGTGGTT-CT 4439 Query 111640 TCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 || | | || ||||| || | ||| ||||||||||| ||||| || |||| |||| || Sbjct 4438 TCTTCAGGTCGAGGAAGTCAAAGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAG 4379 Query 111699 ATCCCTTTCG 111708 ||||| || Sbjct 4378 CACCCTTGCG 4369 Score = 109 bits (120), Expect = 7e-19 Identities = 215/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || || || || ||| |||| ||||| | || |||| | | || || | ||||| || Sbjct 4137 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCC 4078 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||||||||||| ||| || |||||||| |||| |||||| | || || Sbjct 4077 TCGATCGAGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGAGTG 4018 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 112015 || || |||||||| || || || ||||| |||| | || |||| |||||| Sbjct 4017 CCGGCGTTGAAGAGCGTCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAG 3958 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | |||| ||| ||| | |||||| || || ||||||| |||| Sbjct 3957 GTCTCGATCACGGCGGGGATGTTGTCCTTGTGCAGGCCGATGGCCACGCGCATGAGCATG 3898 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--TAGCTCTTCTCAAGGG 112133 | ||| || || | || |||| |||| || |||||| ||| ||| |||| Sbjct 3897 TGCTGGGGACGCTCGACGATCTTGCCGTCGACCC--TGAAGAGGTAGGAGCGCTCGAGGG 3840 Query 112134 TTTTGAGACCAAAGTA 112149 | |||| |||||||| Sbjct 3839 TCTTGAAGCCAAAGTA 3824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627889923460800