Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq378 215 6e-51 seq4651 109 7e-19 >seq378 Length=11515 Score = 215 bits (238), Expect = 6e-51 Identities = 879/1365 (64%), Gaps = 44/1365 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| || |||||||| |||| |||||| || | ||||| |||| Sbjct 5708 CGAAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 5649 Query 117897 AACTTGGA----GAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGAT 117952 | ||||| ||||| | | | |||| ||| ||| | ||| || ||||| Sbjct 5648 AGCTTGGCAAACGAGGGCTCGCC----CATGTAGACGTTGAGCGACTGGCTCTGGTCGAT 5593 Query 117953 GAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGT 118012 | || ||||| || ||||| || || | | | | || |||||||| || Sbjct 5592 GTAGGCCGAGCGATCGGCGGCCATGTCGATGATGACGCGCTGCGGGAGCTCCCACACGGT 5533 Query 118013 CCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGC 118072 | |||| || ||||| || || || ||||| ||| |||| |||| || || Sbjct 5532 CTTGTACAGCTTCTTGATGTCGTCGGGGATCTCCTCGATGCGCTGGACCGAGCCGTTGTG 5473 Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 | ||| | | ||| | | |||||||| || || | ||| || || Sbjct 5472 CGAGACGAGCTTGTTCTTGAGCGCGGGCGACCAGAGGCCGCGCTGCTGGAGCTCGCGCAG 5413 Query 118133 GAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192 || |||| ||||| || || || || |||||| |||| | ||||| ||||| Sbjct 5412 AAGGTGCTCGTTGACGACGGTGAAGTCGCCGGCGAGGATGCGGCGGGTGTAGATGTTGGT 5353 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 |||||| |||||||||||||| ||||| |||| ||| || | || ||||| |||||||| Sbjct 5352 CGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCCGTGGGCAT 5293 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTC 118312 ||| |||| ||| || ||| || ||||| | | ||| | ||| | | | Sbjct 5292 GGGCGCCACGAGGAGCGAGTTGCGCAGACCGTGCTGGGCGATGTTGGCGCGGAGCGTGGC 5233 Query 118313 CCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 118372 |||||| | || | | | | | ||| | || |||||| | || | ||| Sbjct 5232 CCAGTCCCACCTGTCCGACGGCACGACGCCCCAGAGGTCGGGCTGGAGCTTGCCCTTGGA 5173 Query 118373 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGCT 118429 ||| ||||| ||||| | |||| || | |||||| |||| ||| | ||| ||| Sbjct 5172 CGCGGGCGAGCCCTCGTAGGTCTGGTAGGTGCCCTCGACCTGCGCGAGCTCGTTCGAG-- 5115 Query 118430 CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAAT-GCGAGCATTCATTGCCTTGGCCT 118488 || | ||||| |||| || || || || || || ||| | || | | ||||| Sbjct 5114 -GCGACCAGGGCGGCGTAGTAGATGGTCTCGAAGATGGCGCG-GTTGAGCTCGCGGGCCT 5057 Query 118489 CGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 118548 ||||| || ||| | | || | || || || || || || || || || |||| Sbjct 5056 CGTCGCTCTCCCACGGGTGGCGCATGATCATGAAGACGTCGGCCAGGCCCTGCACTCCGA 4997 Query 118549 GGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAAT 118605 ||| || || | || | ||| || || || || || ||| |||||| || | | Sbjct 4996 TGCCGATGGGCCTGTGGCGCATGTTCGAGTTGCG---GGCCTCGGGCACGGGGTAGTAGT 4940 Query 118606 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTT 118665 | | ||||| ||| | || || || |||||||| ||||| || || || ||||| | Sbjct 4939 TGATGTCGATCACCTTGTTGAGGTTCTTGGTGACCACCTTCACGACGTCGTGCAGCTTCT 4880 Query 118666 CGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGAT 118725 || || ||||| || | | ||| |||| || || |||| || ||||| | Sbjct 4879 GGTGGTC-AAACT-CG----CCGTTGGTGATGAACTTGGGCAGCGCGAGCGAGGCCAGGT 4826 Query 118726 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAAC 118785 | || || | ||| || ||||||| | | |||||||||| ||| || Sbjct 4825 TGCAGACGGCCACCTCGTCGGGCGACGTGTACTGGACGACCTCCGTGCACAGGTTCGACG 4766 Query 118786 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCA 118845 || ||||||||| | || || || || ||||| ||| || || |||||||| |||| Sbjct 4765 ACTGAATGGTGCCGAGGTGCTGCTGGTTGGACTTGCCGTTGCAGGCGTCCTTGTACAGCA 4706 Query 118846 TGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA---CATCGGCAG 118902 |||| ||||| || ||||| | || |||| ||| || || ||| | | | ||| Sbjct 4705 TGTAGGGCGTGCCGGTCTCGATCTGCGACTCGAGGATGGCGAACCACAGCTCCTGGGC-- 4648 Query 118903 CTGGCACA-GTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAAC 118961 || | || | |||| || || ||||| | |||||| ||| | || ||| Sbjct 4647 CTTGACCACGCGGCG--CGCGCGGCCCTCCTGCTCGTAGCGCTCGTACTTCTCCTCGAAC 4590 Query 118962 T-CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTG 119020 | ||| ||||| | || | || || || |||| | ||||| ||||| ||||| | Sbjct 4589 TCCTTGCCCCAC-GAGTCGAACAGGCCGGGGGCCTCGTTGGGGCAAAAGAGCGACCAGTC 4531 Query 119021 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGAT 119079 || ||| ||| || ||||||||||| ||||| || ||||| || |||| ||||||||| Sbjct 4530 GCCGCCCGTCTCCACGCGCTTCATGAACAGGTCGGGAATCCACAG-GCCGTAGAAGAGAT 4472 Query 119080 CCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 119137 | || ||| | |||| || | || || || || || | ||||| | ||| Sbjct 4471 CGCG--GGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTCAGGTCGAGGAAGTCAAAGAT 4414 Query 119138 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 ||||||||||| || || ||||| | |||| | ||||| || Sbjct 4413 GTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAAGCACCCTTGCG 4369 Score = 129 bits (142), Expect = 7e-25 Identities = 241/352 (68%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 119208 GCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCC 119267 |||||| |||| | || || ||||| || |||| ||| | ||| ||| || || || Sbjct 4239 GCAGTGTCGTTGTAGACGCGGAGCATGGGGATGAGACCGTTGGAGGTGCCGTTGGTGCCG 4180 Query 119268 CGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 119325 || || ||||| || ||| | || ||| | | || || || || ||| Sbjct 4179 CGGATGTACGAG--TTGGAGGCGCGGATGCGGTGCGCGGCGAGGCCGATGCCGCCGGCCG 4122 Query 119326 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 119385 |||| ||||| | ||||||| | |||| || ||||||| || ||||||||||| ||| Sbjct 4121 ACTTGGAGATGAGGGCGCACTGCTTGAGGGTGTCGTAGATGCCCTCGATCGAGTCCTCCT 4062 Query 119386 TATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAG 119445 | | | || |||||||| ||||| || || | || || || ||||||||||| | Sbjct 4061 TCATGGTGAGCAGGAAGCACGACGACAGCTGCGGACGCGGAGTGCCGGCGTTGAAGAGCG 4002 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGG 119505 | || || |||||| |||| | || |||| |||||||||||| | ||||||| Sbjct 4001 TCGGGGTGGCGTGGGTGAAGAGCTGCTGCGACAAGAGGTCGTAGGTCTCGATCACGGCGG 3942 Query 119506 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 | |||| ||| ||| | ||||| | || ||||| | ||||| ||||| Sbjct 3941 GGATGTTGTCCTTGTGCAGGCCGATGGCCACGCGCATGAGCATGTGCTGGGG 3890 >seq4651 Length=3183 Score = 109 bits (120), Expect = 7e-19 Identities = 312/472 (66%), Gaps = 17/472 (4%) Strand=Plus/Minus Query 129838 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGAT 129897 |||||| || || | |||| |||| ||||||| |||| |||| |||||| ||||| Sbjct 1772 GAGGAGGCGGTCGGCGACGAACTCGATGTACTGGCACATGAGGTCGGCGTTCATGCCGAT 1713 Query 129898 GAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCAC 129957 |||| ||||||| || | ||| |||||||||| || ||||| || | | Sbjct 1712 GAGGGCCACGGGGAGCGACTCGGTCACGAATTCCTTCTCAATCTCGACAGCCTCGAGGAT 1653 Query 129958 GATGGCGTGAATGGTCTC--CGTGCCAGGTCTATT----GCGCAAAGTCTTGAAGAGTTC 130011 ||| || ||| | | || | ||| || | | ||| || | || ||| Sbjct 1652 GATC---TGCTTGGGCACGTCGGTCGAGGGCTTGTTGACGAGCATGGTGTAGAGGAGG-- 1598 Query 130012 CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 130071 || ||| || || |||||| ||||| || ||| ||| | || || |||| || Sbjct 1597 CA-GGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAG 1539 Query 130072 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 130131 || |||||||| || |||||||| | |||||| || | || || ||| |||||||| Sbjct 1538 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAA 1479 Query 130132 GATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG---AGCGGGACTTTGT 130188 ||| ||||| || ||||| | | ||||||||| || |||| | | || | Sbjct 1478 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 1419 Query 130189 ATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | | ||||||||||||||| | ||||| |||| || | || ||||||| ||| || Sbjct 1418 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 1359 Query 130249 TTCAAAGAGTTCCTTCTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAG 130299 ||||| | ||| || || ||| || |||| ||| | || ||||| Sbjct 1358 GCGGAAGAGGCGGTCCTTCTC-GACGGAGTCCTTGACGTAGGTGTCGATGAG 1308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618295294496880