Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq378 158 1e-33 seq4651 104 3e-17 >seq378 Length=11515 Score = 158 bits (174), Expect = 1e-33 Identities = 649/1010 (64%), Gaps = 24/1010 (2%) Strand=Plus/Plus Query 104597 CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 104656 || ||||| || |||| |||| || ||||| ||||||||||| ||| | || ||||| Sbjct 4369 CGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 4428 Query 104657 GAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 104716 || || ||||| || | |||||| || |||||||||||||| || || Sbjct 4429 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 4488 Query 104717 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 104776 |||||||| || || ||||||||| | || ||| | | ||| | ||||| |||||||| Sbjct 4489 TGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTGGTCGCTCTTTTGC 4548 Query 104777 CCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACA 104836 || || |||| || || || | ||| | ||| ||||||| || | ||| Sbjct 4549 CCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAG 4608 Query 104837 AAGTACGAGGAAGAAGGTCGGGCG-ACTGCGACGGTGCCAGCTGCC---GATGTGTGGAA 104892 |||||| | || || || ||| | ||| ||| | || ||| || ||||| Sbjct 4609 CGCTACGAGCAGGAGGGCCGCGCGCGCCGCG-TGGT-CAAG--GCCCAGGAGCTGTGGTT 4664 Query 104893 AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTG 104952 || || ||| |||| || | |||||| || || || |||||||| ||||| |||||||| Sbjct 4665 CGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTG 4724 Query 104953 TAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGA 105012 ||| ||| || || || | | || || || || || || || || || Sbjct 4725 CAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATTCAGTCGTCGAACCTGTGCACGGA 4784 Query 105013 AATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 105072 || | | | || || ||| ||| || || ||||| || || |||| || Sbjct 4785 GGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTCTGCAACCTGGCCTCGCTCGCGCT 4844 Query 105073 CCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTAC 105132 ||||||| | ||| | | | ||||| | | || || ||||| || Sbjct 4845 GCCCAAGTTCAT--CACCAACGGCGA----GTTTGACCACCAGAAGCTGCACGACGTCGT 4898 Query 105133 GAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGA 105189 ||| |||||||| ||||| |||| || || || | || | |||||||| || Sbjct 4899 GAAGGTGGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA 4958 Query 105190 GACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGC 105249 | || || || || || ||| | ||| | || || || |||| || ||||| || || Sbjct 4959 G---GCCCGCAACTCGAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGC 5015 Query 105250 GGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA-TG 105308 || || ||||| | |||||| | | || |||||| || || |||| | Sbjct 5016 CGACGTCTTCATGATCATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCG 5075 Query 105309 CGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGG 105368 ||| ||| || |||||||| || ||||||| || | || ||| | || ||| Sbjct 5076 CGC-CATCTTCGAGACCATCTACTACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGG 5134 Query 105369 TTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTT 105427 | || || | || | |||| ||||| || || || || |||||| ||| || Sbjct 5135 TCGAGGGCACCTACCAGACCTACGAGGGCTCGCCCGCGTC-CAAGGGCAAGCTCCAGCCC 5193 Query 105428 GATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATC 105487 || | |||| | | | | | | ||||||| | ||| | |||| Sbjct 5194 GACCTCTGGGGCGTCGTGCCGTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATC 5253 Query 105488 AAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCA 105547 || | ||||| || ||| |||||| |||| || ||||| || ||||| ||| | Sbjct 5254 GCCCAGCACGGTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCG 5313 Query 105548 CAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 || ||| |||| || || || |||||||| ||||||||||| |||||||| Sbjct 5314 CAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTA 5363 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||||||||||||||| | || ||| |||| | || Sbjct 3890 CCCCAGCACATGCTCATGCGCGTGGCCATCGGCCTGCACAAGGACAACATCCCCGCCGTG 3949 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| |||||| |||| || | |||| ||||| || || || |||||| Sbjct 3950 ATCGAGACCTACGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTC 4009 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || | || || |||| |||||||| || ||| ||||||||| Sbjct 4010 AACGCCGGCACTCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGAC 4069 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | || ||||| | || || | | |||| || | ||||| |||| ||| || Sbjct 4070 TCGATCGAGGGCATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGTCGGCCGGC 4129 Query 104462 GGTATTGG 104469 || || || Sbjct 4130 GGCATCGG 4137 >seq4651 Length=3183 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 94746 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTT 94800 |||| ||||| || || ||||| ||||||||| | | | || |||| |||| Sbjct 1381 TCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGG-GCGTCGAGACCTTC 1439 Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860 || ||||| ||| ||| ||| || || ||||| ||||||||||| || ||||||| Sbjct 1440 GCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC 1499 Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920 | || | |||||||||||||| || |||||||| || ||| |||| |||||| | Sbjct 1500 TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATG 1559 Query 94921 ATCTCTCGTGACGAGGGACTCCAC 94944 ||| || || ||||| |||||| Sbjct 1560 ATCAGCCGCGATGAGGGCCTCCAC 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583128851825520