Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6806 111 5e-19 seq1785 111 5e-19 seq4764 96.9 1e-14 seq17941 87.8 5e-12 seq17907 87.8 5e-12 seq13361 87.8 5e-12 seq10929 87.8 5e-12 >seq6806 Length=2266 Score = 111 bits (122), Expect = 5e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || || |||||||| ||||| || || || || || || Sbjct 2245 CATACCGCCACGAAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTC 2186 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||| ||||| ||||| ||||||||||| Sbjct 2185 GGCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGG 2126 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 ||| || || || || ||||| || || || || || || || | ||| | ||| | Sbjct 2125 AGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTATC-GCTGGACT 2067 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || | ||||| ||||| || || || || || ||||||||| Sbjct 2066 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 2014 >seq1785 Length=5934 Score = 111 bits (122), Expect = 5e-19 Identities = 168/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | ||||| || ||||| || ||||| || || || || || || Sbjct 4346 CATACCGCCACGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 4405 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||||||||| ||||| ||||| || || Sbjct 4406 GGCGAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGG 4465 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGG-T 140684 ||| || ||||| || ||||| || ||| || || || || || |||| || | ||| Sbjct 4466 AGGGATGCCTTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATCGTGTC-GCTGGAC 4523 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || | ||||| ||||| || || || || || || |||||| Sbjct 4524 TCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCATT 4577 >seq4764 Length=3127 Score = 96.9 bits (106), Expect = 1e-14 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||||||||| || || || || || || | | || || || || Sbjct 83 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCC 142 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| || || |||||||| || ||||| || || || ||| Sbjct 143 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 202 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || |||| || | ||||| || || |||| ||| Sbjct 203 TGGATCTTCTGCTTGACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTAATGGTC 262 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| || || || || || ||||||||| Sbjct 263 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATT 295 >seq17941 Length=511 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 2 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 61 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 62 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 92 >seq17907 Length=514 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 2 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 61 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 62 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 92 >seq13361 Length=1037 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 98 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 39 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 38 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 8 >seq10929 Length=1350 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 98 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 39 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 ||||||||||| ||||||||||| ||| || Sbjct 38 CTCGTGGGTTCGAACCCCACTCCAGGCAATT 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514903041862694