Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq378 215 6e-51 seq4651 132 5e-26 seq540 102 9e-17 >seq378 Length=11515 Score = 215 bits (238), Expect = 6e-51 Identities = 554/830 (67%), Gaps = 38/830 (5%) Strand=Plus/Plus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCC---GACTGAAGCGGCGCGCAAGTC 55194 |||||| ||| ||| ||||||| || |||||||| | | || ||| ||||| || Sbjct 4914 GAACCTCAACAAGGTGATCGACATCAACTACTACCCCGTGCCCGA---GGCCCGCAACTC 4970 Query 55195 CAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGAT 55254 ||| | || ||| ||||||||| |||||| || |||||| |||||||| |||||||||| Sbjct 4971 GAACATGCGCCACAGGCCCATCGGCATCGGAGTGCAGGGCCTGGCCGACGTCTTCATGAT 5030 Query 55255 GCTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTC 55313 | | || | || || || || || | |||| | ||||||| || | Sbjct 5031 CATGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCAACCGCGCCATCTTCGAGAC 5090 Query 55314 GCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACG 55373 |||||||| || || || | | ||| | || || | |||||| |||||| Sbjct 5091 -CATCTACTACGCCGCCCTGGTCGCCTCGAACGAGCTCGCGCAGGTCGAGGGCACCTACC 5149 Query 55374 AGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGT 55433 |||| | | | ||||| || |||||| |||||| ||| || |||||| || Sbjct 5150 AGACCTACGAGGGCTCGCCCGCGTCCAAGGGCAAGCTCCAGCCCGACCTCTGGGGC--GT 5207 Query 55434 CTGACCCCATGTTTGACAAGTTGAAG-----CATG----------ACATTCACTTGTGGG 55478 | || || |||| || | | || | |||| | | | Sbjct 5208 CGTGCC----GTCGGACAGGTGGGACTGGGCCACGCTCCGCGCCAACATCGCCCAGCACG 5263 Query 55479 GCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGG 55538 | || |||||||| || ||||||||||| ||||| || || ||||| | |||||| ||| Sbjct 5264 GTCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGATCCTGG 5323 Query 55539 GCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAG 55598 ||||||||||| || ||||| |||||||||||||||||| ||||| | ||| || | Sbjct 5324 GCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACCCGCCGCATCCTCGCCG 5383 Query 55599 GTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG- 55657 | || || | | ||||| ||||||| | || || ||| || | | ||| Sbjct 5384 GCGACTTCACCGTCGTCAACGAGCACCTTCTGCGCGAGCTCCAGCAGCGCGGCCTCTGGT 5443 Query 55658 AACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCA--GAATC-TGGAG 55714 ||||| | |||||| | | || | || || || ||||| | ||| |||| Sbjct 5444 CGCCCGC-GCTCAAGAACAAGCTCGTCTCGCACAACGGCTCGGTCCAGCGCATCGAGGAG 5502 Query 55715 ATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC- 55772 | ||| | || | ||||| || | ||| ||| ||||||||| | || ||| | ||| Sbjct 5503 A-TCCCCGACGACATCAAGAAGCTGTACAAGACCGTGTGGGAGCTCCCGCAG-CGCGTCA 5560 Query 55773 TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 | || |||||| || ||||| || |||||||||||| |||||| || ||| ||| Sbjct 5561 TCATCGACATGGCCGCCGATCGCTCGGCCTACATCGACCAGAGCCAGTCGCTCAACGTCT 5620 Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 ||||| | || || | |||||| | | |||||||||||| |||| ||| |||| Sbjct 5621 ACATGGGCGAGCCCTCGTTTGCCAAGCTCACCTCGATGCACTTCTACGCCTGGCGCAAGG 5680 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCCAAGGCG 55942 | |||||||| || |||||||| || || ||||| || ||||| ||| Sbjct 5681 GCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCCGCCGCCAACGCG 5730 Score = 152 bits (168), Expect = 6e-32 Identities = 254/360 (71%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGC-GTGTCCGTGAGACGTA 53250 |||||||||| ||| | || | ||| ||| || | | ||| ||| || |||| || Sbjct 3903 TCATGCGCGTGGCCATCGGCCTGCACAAGGACAACATCCCCGCCGTGATCG--AGACCTA 3960 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 |||| | || || || ||| || |||||||| || || || |||||||| || || Sbjct 3961 CGACCTCTTGTCGCAGCAGCTCTTCACCCACGCCACCCCGACGCTCTTCAACGCCGGCAC 4020 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | || ||| ||||| ||||||||| | | |||||||| ||||||||||| || Sbjct 4021 TCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGACTCGATCGAGGG 4080 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||||||| || |||||| |||| |||| ||||||||||| | | || || ||||| | Sbjct 4081 CATCTACGACACCCTCAAGCAGTGCGCCCTCATCTCCAAGTCGGCCGGCGGCATCGGCCT 4140 Query 53431 CCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 | | || | | || |||| || | | | ||| || || |||||| | || Sbjct 4141 -CGCCGCGC-ACCGCATCCGCGCCTCCAACTCGTACATCCGCGGCACCAACGGCACCTCC 4198 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || || | || ||||||||||||| |||| |||| ||||| |||||| |||| ||| Sbjct 4199 AACGGTCTCATCCCCATGCTCCGCGTCTACAACGACACTGCCCGCTACGTCGACCAAGGT 4258 Score = 152 bits (168), Expect = 6e-32 Identities = 282/404 (70%), Gaps = 10/404 (2%) Strand=Plus/Plus Query 53546 GGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATT 53605 || ||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||| Sbjct 4357 GGAGGTGGTAAGCGCAAGGGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATC 4416 Query 53606 ATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTG 53665 | || || ||||| ||| ||| || || | || |||| ||| ||| || || Sbjct 4417 TTTGACTTCCTCGACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTC 4476 Query 53666 TT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTG 53724 || ||| || ||||||||||| ||||| |||||| | ||||||| || || || || Sbjct 4477 TTCTACGGC-CTGTGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACGGGCGGCGACTG 4535 Query 53725 GTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAA 53784 || || | ||||| |||||| ||||||||| | | || ||||||| | Sbjct 4536 GTCGCTCTTTTGCCCCAACGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGA 4595 Query 53785 CGAGATGTATCGGACG-TAC--GCAGTTCAGGGCCGCTACAAGAAG-AAGGTCAAGGCGC 53840 |||| ||| || || ||| |||| |||||||| | | | ||||||||| | Sbjct 4596 GGAGAAGTA-CGAGCGCTACGAGCAG--GAGGGCCGC-GCGCGCCGCGTGGTCAAGGCCC 4651 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 ||| | ||| || |||||| || ||| | ||||| || ||||| |||||| | Sbjct 4652 AGGAGCTGTGGTTCGCCATCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGT 4711 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 ||||||| | ||||| ||| ||||||| || || ||||| Sbjct 4712 ACAAGGACGCCTGCAACGGCAAGTCCAACCAGCAGCACCTCGGC 4755 >seq4651 Length=3183 Score = 132 bits (146), Expect = 5e-26 Identities = 337/507 (66%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| ||||| | ||| |||| || || || | ||||| ||||| || || ||||| Sbjct 1577 GCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGGCCGGGCATGAGGCCGCGCTT 1518 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| ||||||| |||||| || |||||||||||| ||||| || || Sbjct 1517 CTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAA 1458 Query 74888 GGCGACAAGGCGTTGCGCGAA-----CGGTGCA-TCGGAAGTCATCCAAGTCTGAGCCCA 74941 |||| || || | ||||| || || || | ||||| || ||||| Sbjct 1457 TCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTTGTTGATCCACTTCATCGCCCA 1398 Query 74942 TTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTC 75001 || || || ||||||| || || || ||||| || ||||||||| ||||||| Sbjct 1397 GTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCGCGGAAGAGGCGGTCCTTCTC 1338 Query 75002 TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061 ||| ||||||||| |||| || | || |||||| |||| || || || ||| Sbjct 1337 GACGGAGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTACATCTCGGAGTGGATGTTCTC 1278 Query 75062 GTTGAACGACTGGTACGC-GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGA 75118 | || ||| | | | || |||||| | |||||||| | | ||| || ||||| ||| Sbjct 1277 GATGG-CGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACCTCCTTCATGA 1219 Query 75119 AAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 | | | ||| |||||| ||||||||||| || ||||| || |||| || Sbjct 1218 AGCGGCC--GGCGAGATTCTCGGCCACGATGCCGTCGCTAGCCGCGAAGAAGGCCAAGAC 1161 Query 75179 CATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGC 75238 ||||| ||||| | ||| |||| |||| ||||| | ||||| ||| Sbjct 1160 GTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCAGTGCTTCATGTCGGAGCT 1101 Query 75239 CAAATCAATCTCCTCGACCGTCCAGAA 75265 || ||| | |||||| |||||||||| Sbjct 1100 CAGATCGACTTCCTCGGCCGTCCAGAA 1074 >seq540 Length=9919 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 117350 CGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTT 117409 ||||| ||||| || ||| ||| | | |||| | |||||||| |||| |||||| Sbjct 8976 CGCGTGCCGAACTGCCCAGCCGGATAGAGGAGGGGGACGTTGTTGGAGCCCGGGAAGTTT 8917 Query 117410 TGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGC 117469 || |||| || ||| || || ||||| ||| || || ||||| || ||||| ||| Sbjct 8916 TGCGCCATGTGGACGATGGTCGAATGGAGCGACGCTTCGCCGTGGTGGTAGGCCGTTTGC 8857 Query 117470 TCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGT-CAGGTTCTTCTTGAG 117528 || | ||||||||| || ||||| ||||||||||| || | || ||| ||| |||| Sbjct 8856 TCGGACACGTAGCCGGCAAGCTGCGCCACCTTCATTTC-GCTGTGCAGTTTCCGTTTGAA 8798 Query 117529 GCAGGCATAAATCACCTT 117546 ||| || || | ||||| Sbjct 8797 GCACGCGTACAGGACCTT 8780 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 152073 CCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATT 152132 |||||| || ||||| |||| || | ||||||| || |||||||| |||| ||| || Sbjct 8977 CCGCGTGCCGAACTGCCCAGCCGGATAGAGGAGGGGGACGTTGTTGGAGCCCGGGAAGTT 8918 Query 152133 CTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTG 152192 || |||| | || || || || || |||||| |||||||| || ||||| || Sbjct 8917 TTGCGCCATGTGGACGATGGTCGAATGGAGCGACGCTTCGCCGTGGTGGTAGGCCGTTTG 8858 Query 152193 CTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAG 152252 ||| | | ||| || || | ||||||||||||||| || | ||| ||| |||| Sbjct 8857 CTCGGACACGTAGCCGGCAAGCTGCGCCACCTTCATTTCGCTGTGCAGTTTCCGTTTGAA 8798 Query 152253 ACAGGCGTAAATCACCTT 152270 || ||||| | ||||| Sbjct 8797 GCACGCGTACAGGACCTT 8780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547092206060400