Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7680 82.4 6e-11 >seq7680 Length=2005 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 52759 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACGTG-CGGAG 52815 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | | || | || Sbjct 1211 ACCCGGTGATCGGAGACAAGTTCGCGTCGCGGCACGG-GCAGAAGGGTGTCATGTCCCAG 1153 Query 52816 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 52875 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 1152 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 1095 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 52907 ||||||| |||||||| ||||| | |||||| Sbjct 1094 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 1063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406220780369016