Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6713 100 2e-16 seq15283 96.9 2e-15 seq140 95.1 8e-15 seq4792 93.3 3e-14 seq3858 89.7 3e-13 seq7266 87.8 1e-12 seq4764 87.8 1e-12 seq4204 87.8 1e-12 >seq6713 Length=2293 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | |||||| | || | |||||||| ||||||||| ||||| || || | Sbjct 238 GCCGCCACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGC 179 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| |||||||| || Sbjct 178 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGG 119 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||||| || || ||| | || || || ||| ||| Sbjct 118 GATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTATCGCTCG-ACTCG 61 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | || ||||| |||||||| | || ||||| || ||||||||| Sbjct 60 ACCTCGAGAGTAATCGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 10 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | || || || | || || || || Sbjct 441 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGACCATCCTCGAGCTGC 382 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| ||||| || || | ||||||||||| |||||| Sbjct 381 TTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTC 322 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| |||||| || || | ||| || || || ||||| Sbjct 321 TG-CTTCACGTTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGATAGTCTTGCCGGT 263 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || || || || ||||||||| Sbjct 262 GAGGGTCTTGACGAAGATCTGCATG 238 >seq15283 Length=765 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | || | ||||| ||| |||||| || ||||| || || Sbjct 231 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 172 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || ||||| || || | |||||| |||||||| Sbjct 171 AGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGG 112 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||| || || ||| | || ||||| | || Sbjct 111 GGGGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGACT 53 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||| || || || ||||| | || ||||| || |||||||| Sbjct 52 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1 >seq140 Length=17166 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || |||| || | |||||||| |||||| || ||||| || || | Sbjct 1208 CGCCACCACGCAGTCGCAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 1267 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || | ||||| ||||| |||| Sbjct 1268 CCAGAGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCG 1327 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||||| || || ||| | || ||||| |||||| Sbjct 1328 GGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCCGAGCTCTCG 1386 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | ||| || || || ||||| | || || || || ||||||||| Sbjct 1387 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATG 1437 >seq4792 Length=3108 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | || || | || | ||||| ||| |||||| || ||||| || || Sbjct 1741 GTTGCCGCCACGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1682 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || ||||| || || || | |||||| |||||||| Sbjct 1681 AGCCAGAGTGCGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGGTCCGG 1622 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||| || || ||| | || ||||| | || Sbjct 1621 GGGGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGACT 1563 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 | || || | ||| || || || ||||| | || ||||| || ||||||| ||||| Sbjct 1562 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTTG 1506 >seq3858 Length=3670 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | ||||| | || | ||||| ||| |||||| || ||||| || || Sbjct 940 GTTGCCACCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 881 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || ||||| || || || | |||||| || ||||| Sbjct 880 GGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGATCCGG 821 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| ||||||||| || ||| | || || || | || Sbjct 820 GGGGATGCCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATGGTATCGCTGGACT 762 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | ||| || || || ||||| | ||| || || || ||||||||| Sbjct 761 CGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 709 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | || || || |||| || || || Sbjct 684 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 625 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| ||||| || || | ||||||||||| |||||| Sbjct 624 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 565 Query 34624 TGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 || || ||| | || ||||| ||| ||| || || | ||| || || || || | Sbjct 564 TG-CTTGACGTTCTCGATCGTGTCGCTCG-ACTCAACCTCGAGGGTGATGGTCTTGCCAG 507 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTT 34709 | | || ||||| || || |||||||| Sbjct 506 TCAGGGTCTTCACGAAGATTTGCATGTT 479 >seq7266 Length=2119 Score = 87.8 bits (96), Expect = 1e-12 Identities = 166/238 (70%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | || | ||||| ||| |||||| || ||||| || || Sbjct 1602 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1543 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || |||||||| || || | |||||| || || || Sbjct 1542 GGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCGGG 1483 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTC 34653 || | ||||||||||| ||||||||| || ||| | || || || ||| | Sbjct 1482 AGGGATGCCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATGGTATCGCTCG-AC 1425 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 || || || | ||| || || || ||||| | || ||||| || || |||| ||||| Sbjct 1424 TCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTGTTG 1367 >seq4764 Length=3127 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/236 (70%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | |||||| | || | |||||||| |||||| || ||||| || || | Sbjct 66 CGCCTCCGCGAAGACGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 125 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || | ||||| || ||||| | Sbjct 126 CCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGG 185 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTC 34655 | | ||||||||||| |||||| || || ||| | || ||||| ||| ||| Sbjct 186 GAATGCCCTCCTTGTCCTGGATCTTCTG-CTTGACGTTCTCGATCGTGTCGCTCG-ACTC 243 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 || || | ||| || || || ||||| | || ||||| || ||||||| ||||| Sbjct 244 AACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTGTTG 299 >seq4204 Length=3449 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | ||||| | || | ||||| ||| |||||| || ||||| || || Sbjct 241 GTTGCCACCGCGGAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 182 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || ||||| || || | ||||| |||||||| Sbjct 181 GGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGG 122 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTC 34653 || | ||||||||||| |||||| || || ||| | || ||||| ||| | Sbjct 121 GGGGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATAGTGTCGCTCG-AC 64 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || | || ||||| ||||| || | || ||||| || ||||||||| Sbjct 63 TCGACCTCGAGAGTAATCGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314660180288834