Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7588 125 6e-24 seq4764 122 8e-23 seq7266 116 3e-21 seq6713 116 3e-21 seq140 116 3e-21 seq3858 114 1e-20 seq1785 109 5e-19 seq6806 95.1 1e-14 >seq7588 Length=2028 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | |||||||| || || || | | Sbjct 34 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCCAGC 93 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || ||||| |||||||| || |||||||| Sbjct 94 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCGCCCGATCAG 153 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | || ||| | ||| | |||| |||||| Sbjct 154 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 213 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 214 ATCCAGAAGGAGTCCAC 230 >seq4764 Length=3127 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | ||||| || || || || || | Sbjct 294 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCGAGC 235 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||| || || || || ||||| || ||||| || || ||||| Sbjct 234 GACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAG 175 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | ||| | |||| |||||| Sbjct 174 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAAC 115 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 114 ATCCAGAAGGAGTCTAC 98 >seq7266 Length=2119 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||||||| | || || || || || || || | Sbjct 1372 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC 1431 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||||| || || ||||| || ||||| || |||||||| Sbjct 1432 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 1491 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || | || ||| | ||| | |||| |||||| Sbjct 1492 CAGCGTCTCATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 1551 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || |||||||| ||| | || | || | ||| |||| || |||| Sbjct 1552 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGTCTGCGCGGCGGCA 1600 >seq6713 Length=2293 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||||||| ||| | |||||||| || || || | Sbjct 7 CGGCATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACGATTACTCTCGAGGTCGAGTC 66 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | ||| | || |||| || || || || || || ||||| || ||||| || || || Sbjct 67 GAGCGATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 126 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||| || | || ||| | ||| | |||| || Sbjct 127 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTA 186 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||||||||| | || | || | ||| | || || ||||| Sbjct 187 CAACATCCAAAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTTCGTGGCGGCAT 240 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || ||||||||| |||| || || || || || Sbjct 235 CGGCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAGAG 294 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | || |||| || || || || || || ||||| || ||||| || ||||| Sbjct 295 CTCGGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGA 354 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || |||||| | || | ||||||||| || | || || || ||| | | || || Sbjct 355 CCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTGGCTGACTA 414 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 |||||| || ||||||||||| Sbjct 415 CAACATCCAGAAGGAGTCGAC 435 >seq140 Length=17166 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||||||||||| | || || || || || || Sbjct 1440 CGGCATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAG 1381 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | || |||| || || || || || || ||||| || ||||| || ||||| Sbjct 1380 CTCGGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCCGA 1321 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||| || | || ||| | ||| | |||| || Sbjct 1320 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACTCTGGCCGACTA 1261 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| || ||||||||||| | || | || |||| |||| |||||| Sbjct 1260 CAACATCCAGAAGGAGTCGACTCTCCACCTCGTCCTGCGACTGCGTGGTGGC 1209 >seq3858 Length=3670 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || ||||| |||||| | || || || || || || || Sbjct 481 CATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGTCGAG 540 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| |||| ||||| || || || || ||||| || ||||| || || || || Sbjct 541 CGACACGATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 600 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || | || ||| | ||| | |||| ||||| Sbjct 601 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 660 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| | || | || | || | || |||||||| Sbjct 661 CATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGCCTCCGTGGTGGCAT 711 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || || || | Sbjct 709 CATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAG 768 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || ||||| || || ||||| || ||||| || || ||||| Sbjct 769 CGATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 828 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || || || | || ||| | ||| | |||| ||||| Sbjct 829 GCAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 888 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| || |||||||| ||| | || | || | ||| |||| ||||||| Sbjct 889 CATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGTCTGCGCGGTGGCA 938 >seq1785 Length=5934 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||||||| | || || || || || || | | Sbjct 4576 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 4517 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || ||||| || || ||||| |||||||| || ||||| || Sbjct 4516 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 4457 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || | || ||| | || | |||| |||||| Sbjct 4456 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 4397 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || | ||| | ||| |||| || || || Sbjct 4396 ATCCAGAAGGAGTCCACCCTTCACCTCGTTCTTCGTCTGCGTGGCGGTAT 4347 >seq6806 Length=2266 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || || || || || | | Sbjct 2015 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 2074 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || || || ||||| || ||||| || || ||||| Sbjct 2075 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 2134 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || ||| | || | |||| |||||| Sbjct 2135 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACTCTGGCCGACTACAAC 2194 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 2195 ATCCAGAAGGAGTCGAC 2211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434820010584960