Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20polyphaga_20[genbank_20GCA_5F001567625.1_202016-02- 24] 18,098 sequences; 49,353,662 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 2e-13 >seq1 Length=70232 Score = 89.7 bits (98), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 31022 GCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAACAGTGCGTCCGCGATC 31081 |||| | ||| ||||||||||||| || | ||| || | | |||| ||||| Sbjct 12575 GCCTCGACGACGACACCGACGCCCTGGGGCTGGAGGACGTCCATGATGGCGTTGCCGATC 12516 Query 31082 TGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGGCGGGAC 31141 || | |||||||| ||||| | || ||||| || | |||| |||| | ||| | Sbjct 12515 TGCTGGGTGAGCCGCTCCTGGATCTGGAGGCGCCGCGAGAACATCTCCGAGACGCGCGCG 12456 Query 31142 AGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGTGCCGAA 31200 |||||||| ||||| | | ||| || ||||||| ||| ||| ||| ||||| | Sbjct 12455 AGCTTGCTGAGGCCGAGCACCTTCTTGTTGGGGATGTAGCCGAT-GTGCACCTTGCCGTA 12397 Query 31201 GATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGTCACCAT 31260 || || | ||| |||||||| | ||| ||| | |||||||||||| | ||||| Sbjct 12396 GAAGGGGATCATGTGGTGCTCGCACAGCGAGAAGAGGTCGATGTCGCGCACGATGACCAT 12337 Query 31261 CTGGTCATGCTTCTCC 31276 | || || |||||| Sbjct 12336 GTCCTCGTGATTCTCC 12321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187249348889728