Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq57096 129 6e-25 seq41485 129 6e-25 seq41484 129 6e-25 >seq57096 Length=4203 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 3622 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 3681 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 3682 AGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 3741 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 3742 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 3801 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 3802 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCG 3858 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || ||||| || || Sbjct 3859 ATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGC 3918 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 3919 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 3978 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 3979 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 4038 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 4039 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 4096 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 4097 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 4156 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 4157 CGGCCTTCTTGTACATCTCCCAGAT 4181 >seq41485 Length=1387 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 582 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 523 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 522 AGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 463 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 462 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 403 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 402 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCG 346 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || ||||| || || Sbjct 345 ATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGC 286 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 285 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 226 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 225 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 166 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 165 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 108 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 107 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 48 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 47 CGGCCTTCTTGTACATCTCCCAGAT 23 >seq41484 Length=9505 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 352 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 411 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 412 AGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 471 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 472 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCC 531 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 532 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCG 588 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || ||||| || || Sbjct 589 ATGGCGCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGC 648 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 649 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 708 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 709 TCGGGCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 768 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || ||||| | ||||| ||||| | | |||| || ||| || || Sbjct 769 CTAGCCGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 826 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 827 ATTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 886 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 887 CGGCCTTCTTGTACATCTCCCAGAT 911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517154270833200