Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq53831 86.0 6e-12 >seq53831 Length=10026 Score = 86.0 bits (94), Expect = 6e-12 Identities = 172/254 (68%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 16505 GAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGT 16564 ||||| |||||||| ||||| || || || || |||||||| | || || | | | | Sbjct 5532 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGCACCTTGCTTCGGGCACTGGC 5473 Query 16565 ACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || || || | || || ||||||||||||| |||||||||||| || || ||| Sbjct 5472 ACCTCTTTCATG---AAGCGACCCGCCAGGTTCTCTGCCACGATACCGTCGCTAGCGGCA 5416 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCT 16681 || || |||| | |||||| ||||| | |||||| | || ||| ||||| | Sbjct 5415 AAGAATGCCAGAACGTGCTTGATGAAGTGCGGTTCGTCGGCCGTGAGAGATTGCCAGTGC 5356 Query 16682 TTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTA 16741 || | || | | ||| || || || | ||||| ||| ||| | ||||| || Sbjct 5355 TTGATGTCATCACCGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTG 5296 Query 16742 TACATTTTCCAAAT 16755 ||||| | ||| || Sbjct 5295 TACATCTCCCAGAT 5282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511027706786800