Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_003521.1 Length=241087 Score E Sequences producing significant alignments: (Bits) Value seq53469 89.7 8e-13 seq53468 89.7 8e-13 seq53467 89.7 8e-13 >seq53469 Length=15922 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77351 CGCCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGA 77410 ||||||| | || || ||||||||||| ||||||||||| || |||||||||||||| | Sbjct 10803 CGCCGGGAGCGAGAAGCGTGGAGTAGCAGAGGTTGTGGGCAATCATGATGGAGGGGTACA 10744 Query 77411 GGCTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGA 77470 | |||||| |||| | || | ||| ||| ||||||| || | ||| | | | Sbjct 10743 GCGAGGCGAAATCGAGGGTGGCGATGGGCACGTCGTAGTAGGCCGTCTTGGGGGCAATCA 10684 Query 77471 CGGTGGCACCCTGGTAG 77487 || |||| |||| |||| Sbjct 10683 CGATGGCGCCCTTGTAG 10667 >seq53468 Length=15938 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77351 CGCCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGA 77410 ||||||| | || || ||||||||||| ||||||||||| || |||||||||||||| | Sbjct 10803 CGCCGGGAGCGAGAAGCGTGGAGTAGCAGAGGTTGTGGGCAATCATGATGGAGGGGTACA 10744 Query 77411 GGCTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGA 77470 | |||||| |||| | || | ||| ||| ||||||| || | ||| | | | Sbjct 10743 GCGAGGCGAAATCGAGGGTGGCGATGGGCACGTCGTAGTAGGCCGTCTTGGGGGCAATCA 10684 Query 77471 CGGTGGCACCCTGGTAG 77487 || |||| |||| |||| Sbjct 10683 CGATGGCGCCCTTGTAG 10667 >seq53467 Length=12679 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 77351 CGCCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGA 77410 ||||||| | || || ||||||||||| ||||||||||| || |||||||||||||| | Sbjct 1702 CGCCGGGAGCGAGAAGCGTGGAGTAGCAGAGGTTGTGGGCAATCATGATGGAGGGGTACA 1761 Query 77411 GGCTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGA 77470 | |||||| |||| | || | ||| ||| ||||||| || | ||| | | | Sbjct 1762 GCGAGGCGAAATCGAGGGTGGCGATGGGCACGTCGTAGTAGGCCGTCTTGGGGGCAATCA 1821 Query 77471 CGGTGGCACCCTGGTAG 77487 || |||| |||| |||| Sbjct 1822 CGATGGCGCCCTTGTAG 1838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770767162678800