Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq41484 150 3e-31 seq57096 149 9e-31 seq41485 149 9e-31 >seq41484 Length=9505 Score = 150 bits (166), Expect = 3e-31 Identities = 395/592 (67%), Gaps = 12/592 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 355 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 414 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||||||||| || ||||| || ||||| ||| || || || ||||| Sbjct 415 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 473 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGT-CAT 50134 ||| || || || ||||| || | || || | ||| | | | | ||| | | | Sbjct 474 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 533 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 534 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 593 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || || || || || || || || ||||| | || || Sbjct 594 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 653 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 654 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 713 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 714 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 773 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || ||||| || || || || || || | ||| | | |||| || | || Sbjct 774 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGATTCCC 832 Query 50432 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 833 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 891 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 || || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 892 TTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 943 >seq57096 Length=4203 Score = 149 bits (164), Expect = 9e-31 Identities = 376/561 (67%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 3625 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3684 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||||||||| || ||||| || ||||| ||| || || || ||||| Sbjct 3685 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 3743 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGT-CAT 50134 ||| || || || ||||| || | || || | ||| | | | | ||| | | | Sbjct 3744 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 3803 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 3804 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 3863 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || || || || || || || || ||||| | || || Sbjct 3864 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 3923 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 3924 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 3983 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 3984 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 4043 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || ||||| || || || || || || | ||| | | |||| || | || Sbjct 4044 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGATTCCC 4102 Query 50432 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 4103 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 4161 Query 50491 TTTTTATACATATTCCAGATG 50511 || || ||||| | ||||||| Sbjct 4162 TTCTTGTACATCTCCCAGATG 4182 >seq41485 Length=1387 Score = 149 bits (164), Expect = 9e-31 Identities = 376/561 (67%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 579 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 520 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||||||||| || ||||| || ||||| ||| || || || ||||| Sbjct 519 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 461 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGT-CAT 50134 ||| || || || ||||| || | || || | ||| | | | | ||| | | | Sbjct 460 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 401 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 400 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 341 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || || || || || || || || ||||| | || || Sbjct 340 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 281 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 280 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 221 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 220 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 161 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || ||||| || || || || || || | ||| | | |||| || | || Sbjct 160 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGATTCCC 102 Query 50432 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 101 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 43 Query 50491 TTTTTATACATATTCCAGATG 50511 || || ||||| | ||||||| Sbjct 42 TTCTTGTACATCTCCCAGATG 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717725699003600