Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq57096 147 3e-30 seq41485 147 3e-30 seq41484 147 3e-30 >seq57096 Length=4203 Score = 147 bits (162), Expect = 3e-30 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 3625 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3684 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||||||||| || ||||| || || || ||| | | | || || ||||| Sbjct 3685 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 3743 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || | | || | Sbjct 3744 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 3803 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 3804 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 3863 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 3864 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 3923 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 3924 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 3983 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | || || | || | ||| ||| ||| || ||||| || || Sbjct 3984 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 4043 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CC 42536 || || || ||||| || || || || || | | |||| || |||| | ||| || Sbjct 4044 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGATTCCC 4102 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 4103 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 4161 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 4162 TTCTTGTACATCTCCCAGAT 4181 >seq41485 Length=1387 Score = 147 bits (162), Expect = 3e-30 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 579 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 520 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||||||||| || ||||| || || || ||| | | | || || ||||| Sbjct 519 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 461 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || | | || | Sbjct 460 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 401 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 400 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 341 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 340 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 281 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 280 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 221 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | || || | || | ||| ||| ||| || ||||| || || Sbjct 220 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 161 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CC 42536 || || || ||||| || || || || || | | |||| || |||| | ||| || Sbjct 160 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGATTCCC 102 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 101 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 43 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 42 TTCTTGTACATCTCCCAGAT 23 >seq41484 Length=9505 Score = 147 bits (162), Expect = 3e-30 Identities = 375/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 355 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 414 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||||||||| || ||||| || || || ||| | | | || || ||||| Sbjct 415 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 473 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || | | || | Sbjct 474 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 533 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 534 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 593 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 594 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 653 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 654 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 713 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 ||||| || || | || || | || | ||| ||| ||| || ||||| || || Sbjct 714 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 773 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT-CC 42536 || || || ||||| || || || || || | | |||| || |||| | ||| || Sbjct 774 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGATTCCC 832 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 833 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 891 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 892 TTCTTGTACATCTCCCAGAT 911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670631734872400