Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq60261 96.9 4e-15 seq60216 96.9 4e-15 seq53109 96.9 4e-15 seq53831 93.3 4e-14 seq43031 89.7 5e-13 seq56944 87.8 2e-12 seq41697 87.8 2e-12 >seq60261 Length=7311 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| | |||| || || || || || |||||||| ||| Sbjct 1203 GCCGCCGCGCAGACGAAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 1262 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| ||||| || || || || |||| ||||| ||||| |||||||| Sbjct 1263 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGG 1322 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || ||||| || | | || | ||||||| | || || Sbjct 1323 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATTGTGTCCGAGCTCTCGAC 1382 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||||| || || ||||| || ||||| Sbjct 1383 CTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 1430 >seq60216 Length=3196 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| ||| ||||| || || || Sbjct 946 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1005 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || || ||||| || || || ||||| || ||||| ||| ||||| || Sbjct 1006 GCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 1065 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || || || | || | |||||||||||||| || Sbjct 1066 ACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTCAGCGTC 1125 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 1126 TTGACGAAGATCTGCATA 1143 >seq53109 Length=5902 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || |||| || ||||| || ||||| Sbjct 4433 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCATCCTCGAGCTGCTTACCG 4374 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || |||||||||||||| ||||| || ||||| || || || ||| Sbjct 4373 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTT 4314 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||||| || | || | |||||||||||||| || Sbjct 4313 ACGTTCTCGATGGTGTCGCTCGACTCTACCTCGAGGGTGATCGTCTTGCCGGTCAGGGTC 4254 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 4253 TTGACGAAGATCTGCATA 4236 >seq53831 Length=10026 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || |||||||| ||||| || |||||| ||||||| | | || ||||| | | ||| Sbjct 5965 GAGGCCGTCGAGATCGAGAAGGAGTTTGTCACGGAGTCGCTCCCGGTGGCGCTCATCGGC 6024 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAG 50751 |||||||| | | | | |||| ||||||| |||||||| || ||| | || | || | Sbjct 6025 ATGAACGCGGGCCTCACGTGCCAGTACATCGAGTTTGTCGCCGACCGTCTGCTCGTGGCG 6084 Query 50752 CT--GGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATAT 50809 || || | || ||| |||| || || |||||||| || | ||| | || | Sbjct 6085 CTCGGGTGCGAC--AAACACTACAACGCCACCAACCCCTTCCCCTGGATGGAGCTGATCT 6142 Query 50810 CGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50856 | | |||||||| || ||||| ||||| | || || ||||| ||| Sbjct 6143 CACTCGAGGGCAAGACCAACTTCTTCGAGCGCCGAGTCGGCGAGTAC 6189 >seq43031 Length=7181 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || || ||||| ||| | |||| ||| ||||| || || ||| Sbjct 19 GTCGACTCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 78 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || |||||||||||||| ||||| || ||||| ||| ||||| || Sbjct 79 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 138 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| ||| || || || | || | ||||||||||| | || Sbjct 139 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 198 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 199 TTCACGAAGATCTGCAT 215 >seq56944 Length=8418 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| | || | || || || || || |||||||| ||| Sbjct 7190 GCCGCCGCGCAGACGAAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 7131 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||| ||||| || |||||||| |||| || || |||||||| || || Sbjct 7130 CAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCAGGGGG 7071 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| ||| || || || | | || | ||||| | | || || Sbjct 7070 GATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCGGACGACTCGAC 7011 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||||| || || ||||| || ||||| Sbjct 7010 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 6963 >seq41697 Length=921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| | || | || || || || || |||||||| ||| Sbjct 1 GCCGCCGCGCAGACGAAGAACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 60 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| ||||| || || || ||| |||| || || ||||| |||||||| Sbjct 61 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGG 120 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| ||| || || || | | || | ||||| ||| || || Sbjct 121 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGACTCAAC 180 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| | || || ||||| || ||||| Sbjct 181 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506631033736800