Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq41484 187 4e-42 seq57096 183 4e-41 seq41485 183 4e-41 seq58066 179 5e-40 seq53831 123 4e-23 >seq41484 Length=9505 Score = 187 bits (206), Expect = 4e-42 Identities = 404/591 (68%), Gaps = 24/591 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| Sbjct 935 CTGTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTC 876 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 875 TGGACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC- 819 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATG 125169 ||| || |||||| || || |||| | ||||||||||| || |||| ||| | Sbjct 818 --AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACG 764 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 763 GCATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCG 705 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| Sbjct 704 CGCTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTC 645 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || |||| ||| | || || || || ||||| ||| ||||| Sbjct 644 CTTATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAG 585 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || ||||| || | || ||||| | |||| ||| ||||||| | | || | Sbjct 584 ACCGTGCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--G 527 Query 125409 TCTTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | ||| | |||||| | || || | |||||||||||| |||||||||||||| | Sbjct 526 GCGTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCT 467 Query 125464 CGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || ||| ||||||| |||||||||||||| || ||||||||||| || | Sbjct 466 CCGGCAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCC 408 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 407 TTCAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 357 >seq57096 Length=4203 Score = 183 bits (202), Expect = 4e-41 Identities = 402/589 (68%), Gaps = 24/589 (4%) Strand=Plus/Minus Query 124997 GTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTG 125056 ||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| || Sbjct 4203 GTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTG 4144 Query 125057 GACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGA 125116 ||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 4143 GACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC--- 4089 Query 125117 AACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATGGA 125171 ||| || |||||| || || |||| | ||||||||||| || |||| ||| || Sbjct 4088 AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGC 4032 Query 125172 ATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 4031 ATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCG 3973 Query 125231 GTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| || Sbjct 3972 CTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCT 3913 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 || |||| ||| | || || || || ||||| ||| ||||| || Sbjct 3912 TATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGAC 3853 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 ||||| || | || ||||| | |||| ||| ||||||| | | || | | Sbjct 3852 CGTGCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGC 3795 Query 125411 TTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 ||| | |||||| | || || | |||||||||||| |||||||||||||| || Sbjct 3794 GTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCC 3735 Query 125466 GGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || || || ||| ||||||| |||||||||||||| || ||||||||||| || | Sbjct 3734 GGCAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTT 3676 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 3675 CAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 3627 >seq41485 Length=1387 Score = 183 bits (202), Expect = 4e-41 Identities = 402/589 (68%), Gaps = 24/589 (4%) Strand=Plus/Plus Query 124997 GTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTG 125056 ||| |||||| | | || ||| ||||| |||||||| ||||| |||||||||| || Sbjct 1 GTTCCCCATCCGCCACCAGCGCATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTG 60 Query 125057 GACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGA 125116 ||||| ||| || ||||||||| | ||| || | | ||||| ||| | || Sbjct 61 GACGGCCGAGGAAGTCGATCTGAGCTCCGACATGAAGCACTGGGAA--TCGCTCAAC--- 115 Query 125117 AACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTC-CGATGGA 125171 ||| || |||||| || || |||| | ||||||||||| || |||| ||| || Sbjct 116 AAC-GA-CGAGAGGCACTTCATCAAGCACGTCTTGGCCTTCTTCGC-GGCTAGCGACGGC 172 Query 125172 ATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 ||||| ||| ||||| | | | || ||| | ||| || | || |||| | Sbjct 173 ATCGTGGCCGAGAATCTCGCCGGC-CGCTTCATGAAGGAGGTGCAGGTGCCCGAGGCGCG 231 Query 125231 GTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 ||||| ||||| || |||||| || |||||| | ||||| || |||||||| || Sbjct 232 CTGCTTCTACGGCTTTCAAATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCT 291 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 || |||| ||| | || || || || ||||| ||| ||||| || Sbjct 292 TATCGACACCTACGTCAAGGACTCGGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAGAC 351 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 ||||| || | || ||||| | |||| ||| ||||||| | | || | | Sbjct 352 CGTGCCCTCGGTCAAGAAGAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGC 409 Query 125411 TTCG-----TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 ||| | |||||| | || || | |||||||||||| |||||||||||||| || Sbjct 410 GTCGAGACCTTCGCCGAGCGTCTCGTCGGATTCGCCGCCGTCGAGGGCATCTTCTTCTCC 469 Query 125466 GGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || || || ||| ||||||| |||||||||||||| || ||||||||||| || | Sbjct 470 GGCAGCTTCTGC-TCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCGCCTT 528 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 529 CAGTAACGAGATGATCAGCCGCGATGAGGGCCTCCACTGCGACTTCGCC 577 >seq58066 Length=10012 Score = 179 bits (198), Expect = 5e-40 Identities = 332/483 (69%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 96897 GGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATG 96956 || ||| | ||| ||||| | || || |||||||||||| | |||||||| |||| || Sbjct 6869 GGTGCTTTCGCCATCTACCTCGAGCCCTGGCACGCGGACATCTTTGACTTCCTCGACCTG 6810 Query 96957 CGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTG 97016 || ||| ||| || ||| || ||| | || | || || | || ||| | Sbjct 6809 AAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTGTGGATT 6750 Query 97017 CCAGATTTGTTCATGAAGCGCGTCAACGAC-GGTGGCTACTGGAGCCTAATGTGCCCCGA 97075 || || |||||||||||||||| | ||| || ||| ||||| || | |||||| | Sbjct 6749 CCCGACCTGTTCATGAAGCGCGTGGA-GACGGGCGGCGACTGGTCGCTCTTTTGCCCCAA 6691 Query 97076 CTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTA 97135 | | | ||||| |||| ||| | |||||| | ||||| |||| |||||| | ||| Sbjct 6690 CGAGGCCCCCGGCCTGTTCGACTCGTGGGGCAAGGAGTTCGAGGAGAAGTACGAGCGCTA 6631 Query 97136 CGAGCAAGAGGGCCGATACGTGAGACG---AGTCGATGCACGAGAACTGTGGAAGGCCAT 97192 |||||| |||||||| || | | || ||| | || | || |||||| ||||| Sbjct 6630 CGAGCAGGAGGGCCG---CGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCGCCAT 6574 Query 97193 CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCG 97252 | | | | ||| | ||||| || || || ||||| || |||||||| || || | Sbjct 6573 CCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCTGCAACGG 6514 Query 97253 CAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGT 97312 ||| |||||| | ||| | ||||||||| || || || ||||||||||| | || Sbjct 6513 CAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGGAGGTCGT 6454 Query 97313 AGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAA 97372 ||||| | || || |||||| ||| || ||| ||||| ||| || |||||||| Sbjct 6453 CCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGCTCGCGCTGCCCAA 6394 Query 97373 GTT 97375 ||| Sbjct 6393 GTT 6391 Score = 89.7 bits (98), Expect = 8e-13 Identities = 132/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || |||||| | ||| | | | | | ||||| ||||| ||||| | Sbjct 5717 TACAAGACCGTGTGGGAGCTCCCGCAGCGCGTCA-TCATCGACATGGCCGCCGATCGCTC 5659 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA---CAG 98155 | |||||| |||||||| || ||| |||| | ||| | | ||||||| | | || Sbjct 5658 GGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTTGCCAA 5599 Query 98156 TCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | | || ||||| ||||| ||||| ||| ||||||||||||||| ||||||||||| Sbjct 5598 GC---TCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTA 5542 Query 98216 TCT 98218 || Sbjct 5541 CCT 5539 >seq53831 Length=10026 Score = 123 bits (136), Expect = 4e-23 Identities = 369/554 (67%), Gaps = 34/554 (6%) Strand=Plus/Plus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 ||||||||||| ||||| |||||||| || | || ||||| | |||| || ||| Sbjct 5656 CTCTTTAACGCCATCGAGACGGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCCATGCGG 5715 Query 125391 TGGATCGATGACGACAAGTCTTCGTAC----GCCGACAGACTGGTGGCATTCGCCGCCGT 125446 |||||| | | || | ||| || ||||| | || || | ||||||| |||| Sbjct 5716 TGGATCAACAAGGAGGA-TCTCGACACCTTTGCCGAGCGCCTCGTCGGATTCGCCACCGT 5774 Query 125447 AGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGAC 125505 |||||||||||||| ||||| | || || ||||||| ||||||||||| ||||| | Sbjct 5775 CGAGGGCATCTTCTTCTCGGGCTCCTTCTGTT-CCATCTTCTGGCTCAAGAAACGCGGTC 5833 Query 125506 TCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTG 125565 |||||||||| || | | |||||| | || | ||||||||||| ||| | Sbjct 5834 TCATGCCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCGGCGACGAGGGCCTGCACGCAG 5893 Query 125566 ACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGA--GTGCAGATCCAGCGA--T 125621 | |||||| || |||| || | ||| || || || | || ||||| | Sbjct 5894 AGTTTGCCTGCCTCCTGT------ACAGTATGC-TCGTGAACAAGCCG-TCGAGCGACGT 5945 Query 125622 GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAA 125681 | || | | || || ||| ||||| ||| || | |||||| | || || Sbjct 5946 GCCAAAG-----CAGATCGTCCTCGAGGCCGTCGAGATCGAGAAGGAGTTTGTCACGGAG 6000 Query 125682 TCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG-CTAATGTGCGAGTACATAGAGTT 125740 || || ||||| | || ||||||||| || | || | |||| ||||||| ||||| Sbjct 6001 TCGCTCCCGGTGGCGCTCATCGGCATGAAC-GCGGGCCTCACGTGCCAGTACATCGAGTT 6059 Query 125741 TGTGGCAGATCGTCTACTGTACGAGTTGATTG---GCCGCAAGATTTACAACGCCAAGAA 125797 ||| || || ||||| || || | | | | || ||| |||||||||| || Sbjct 6060 TGTCGCCGACCGTCTGCT---CGTGGCGCTCGGGTGCGACAAACACTACAACGCCACCAA 6116 Query 125798 TCCCTTTGATTTCAT-GACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856 ||||| | || || | | || ||||| ||||| ||||||||||| |||||| Sbjct 6117 CCCCTTCCCCTGGATGGAGCTG-ATCTCACTCGAGGGCAAGACCAACTTCTTCGAGCGCC 6175 Query 125857 AGGTCAGCGAGTAC 125870 ||| |||||||| Sbjct 6176 GAGTCGGCGAGTAC 6189 Score = 96.9 bits (106), Expect = 5e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 98038 TCTACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||||| |||||||| || | | | | | ||||| |||| |||||| | Sbjct 8937 TCTACAAGACTGTGTGGGAGATCTCGCAGCGCGTCA-TCATCGACCTGGCCGCCGACCGC 8879 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 | |||||| |||||||| || ||| |||| || ||| | ||||| ||||||| | Sbjct 8878 TCGGCCTACATCGACCAGAGCCAGTCGCTCAACCTCTACATGGCCGACCCCACCTTCCCC 8819 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 | || || || ||||| || || ||| |||| | |||||||| ||||||||||| Sbjct 8818 AAGCTCACGTCCATGCACTTCTAAGCGTGGCGCAAGAGTCTCAAGACCGGCATGTACTAC 8759 Query 98217 CT 98218 || Sbjct 8758 CT 8757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740498866612400