Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq51907 107 2e-18 seq50290 107 2e-18 seq50289 107 2e-18 seq46138 107 2e-18 >seq51907 Length=4977 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | ||||||| | ||||| || | | Sbjct 2581 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCGTCGGGTCCACCGTGCTTCTTGC- 2523 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 2522 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 2463 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 2462 GGACGTGGAAGCCGTG 2447 >seq50290 Length=5021 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | ||||||| | ||||| || | | Sbjct 2397 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCGTCGGGTCCACCGTGCTTCTTGC- 2455 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 2456 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 2515 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 2516 GGACGTGGAAGCCGTG 2531 >seq50289 Length=3841 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | ||||||| | ||||| || | | Sbjct 1045 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCGTCGGGTCCACCGTGCTTCTTGC- 987 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 986 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 927 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 926 GGACGTGGAAGCCGTG 911 >seq46138 Length=3865 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | ||||||| | ||||| || | | Sbjct 2821 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCGTCGGGTCCACCGTGCTTCTTGC- 2879 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 2880 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 2939 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 2940 GGACGTGGAAGCCGTG 2955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414267167863060