Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq56944 111 4e-19 seq43031 111 4e-19 seq41697 105 2e-17 seq60216 84.2 5e-11 >seq56944 Length=8418 Score = 111 bits (122), Expect = 4e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | ||||| | ||||| Sbjct 7175 AAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGGCCGTC 7116 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| |||||||| || || ||||| || || Sbjct 7115 CTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTC 7056 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | ||| ||| | || ||||| || || || | Sbjct 7055 CTGAATCTTCTGC-TTCACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGG 6997 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || || || || || || ||||||||| Sbjct 6996 TCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATT 6962 >seq43031 Length=7181 Score = 111 bits (122), Expect = 4e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| ||||| ||||| | || || | ||||| Sbjct 3 AAGAACGAGGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCGTC 62 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||| ||||| || || || || || Sbjct 63 CTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTC 122 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | || ||||| | || ||||| || || || || Sbjct 123 CTGAATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGT 182 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || || || || || || || ||||||||| Sbjct 183 CTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 216 >seq41697 Length=921 Score = 105 bits (116), Expect = 2e-17 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 16 AAGAACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTC 75 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| || || ||||| || || || || || Sbjct 76 CTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 135 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | ||| ||||| | || ||||| || || || | Sbjct 136 CTGAATCTTCTGC-TTCACGTTCTCGATGGTGTCGCTGGACTCAACCTCGAGGGTGATGG 194 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || || || || || || ||||||||| Sbjct 195 TCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 229 >seq60216 Length=3196 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 946 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1005 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || |||||||||||| || Sbjct 1006 GCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 1065 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | || | || ||||| || || || ||||| || || || || Sbjct 1066 ACGTTCTCGATCGTGTC-CGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTCAGCGT 1124 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1125 CTTGACGAAGATCTGCAT 1142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150506033856920