Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20quina_20[genbank_20GCA_5F000826445.1_202015-01-07] 60,490 sequences; 83,589,038 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq56944 107 2e-18 seq49253 105 6e-18 seq60261 95.1 1e-14 seq56991 95.1 1e-14 seq58772 93.3 4e-14 seq53109 89.7 4e-13 seq43031 86.0 5e-12 seq60216 82.4 6e-11 >seq56944 Length=8418 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| || ||||||| |||||||||||| || | Sbjct 7382 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTACCGGCGAA 7323 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| || || | || ||||||||| || |||||||||| Sbjct 7322 GATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTT 7263 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| |||| ||||| ||||| || || || |||||||| || || || || Sbjct 7262 CTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTACCGGTCAGGGTCTTGAC 7203 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 7202 GAAGATCTGCAT 7191 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| || ||||||| ||||||||||| || | Sbjct 7154 CTCCTTCTGGATGTTGTAGTCGGCCAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAA 7095 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | | |||||||||| ||| |||||||| | Sbjct 7094 GATGAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTT 7035 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| |||| ||||| ||||| || ||||| || ||||| || || || || Sbjct 7034 CTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGAC 6975 Query 48715 AAAAATCTGCATCGTGTCTTG 48735 || |||||||| || |||| Sbjct 6974 GAAGATCTGCATTGTTGCTTG 6954 >seq49253 Length=1508 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| ||||||||| |||||||| || |||| || ||||||| |||||| Sbjct 1342 TGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 1283 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | || ||||||||| || || Sbjct 1282 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTT 1223 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || |||| ||||| ||||| || ||||| || |||||| Sbjct 1222 TGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTG 1163 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || ||||| || |||||||| || Sbjct 1162 AGGGTCTTCACGAAGATCTGCATGGT 1137 >seq60261 Length=7311 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| || ||||||| |||||||| ||| || | Sbjct 1011 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 1070 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | | ||||||||| || |||||||| | Sbjct 1071 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 1130 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || || | ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 1131 CTCGATCGTGTCAGATGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 1190 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 1191 GAAGATCTGCAT 1202 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 48570 CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCT 48629 ||||||| |||||||| ||| || | || | ||||||||||| ||| | | |||| Sbjct 1547 CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGCGGGATGCCCTCCT 1606 Query 48630 TGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTA 48689 ||||| ||| |||||||| | | | ||||| |||| ||||| ||||| || | Sbjct 1607 TGTCCTGAATCTTCTGCTTCACGTTCTCAATGGTGTCGGACGACTCGACCTCGAGGGTGA 1666 Query 48690 TGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || ||||| || ||||| || |||||||| Sbjct 1667 TCGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1703 >seq56991 Length=1928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| ||||||| || ||||||| |||||||| ||| || | Sbjct 902 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 961 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| ||| | | ||||||||| || |||||||| | Sbjct 962 GATGAGGCGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 1021 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| || | ||| ||||| || ||||| || ||||| || || ||||| Sbjct 1022 CTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTCAC 1081 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 1082 GAAGATCTGCAT 1093 >seq58772 Length=3437 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || ||||||| |||||| Sbjct 1825 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCAAGCTGC 1766 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | | ||||||||| || ||| Sbjct 1765 TTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 1706 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || |||||| | ||||| ||||| || ||||| || ||||| Sbjct 1705 TGCTTCACGTTCTCGATAGTATCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 1646 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || || || || || |||||||| || Sbjct 1645 AGCGTCTTGACGAAGATCTGCATTGT 1620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || ||||||| |||||| Sbjct 2281 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCCTCAAGCTGC 2222 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| || | | ||||||||| || ||| Sbjct 2221 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTC 2162 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || |||| ||| ||||| || ||||| || ||||| Sbjct 2161 TGCTTCACGTTCTCGATAGTGTCGGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGTC 2102 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 2101 AGGGTCTTGACGAAGATCTGCAT 2079 >seq53109 Length=5902 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| || | ||||| |||||||||||| || | Sbjct 4428 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCATCCTCGAGCTGCTTACCGGCGAA 4369 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | | ||||||||| || |||||||| | Sbjct 4368 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTTACGTT 4309 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| ||| | ||||| ||||| || || || || ||||| || || || || Sbjct 4308 CTCGATGGTGTCGCTCGACTCTACCTCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTGAC 4249 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 4248 GAAGATCTGCAT 4237 >seq43031 Length=7181 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || || ||||| || || | || ||||||| |||||||| || || | Sbjct 24 CTCCTTCTGGATATTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 83 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | | ||||||||| ||| || ||||| | Sbjct 84 GATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTCACGTT 143 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || ||| | ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 144 CTCGATCGTGTCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 203 Query 48715 AAAAATCTGCATCGT 48729 || |||||||| || Sbjct 204 GAAGATCTGCATTGT 218 >seq60216 Length=3196 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || ||||||| |||||||| ||| || | Sbjct 1861 CTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1920 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | | ||||||||| || |||||||| | Sbjct 1921 GATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 1980 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || || | ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 1981 CTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 2040 Query 48715 AAAAATCTGCATCGT 48729 || || ||||| || Sbjct 2041 GAAGATTTGCATTGT 2055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420940644400490